HsaINT0049548 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76486781-76487652:-
Coord C1 exon
chr17:76487525-76487652
Coord A exon
chr17:76486930-76487524
Coord C2 exon
chr17:76486781-76486929
Length
595 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCGC
5' ss Score
5.95
3' ss Seq
GGCTGCTGTCCCCCTCCTAGGTC
3' ss Score
9.6
Exon sequences
Seq C1 exon
GCCTGTTCTCCACCATCATGCGAGACCTGGCCAACATCACCCATGACGGCCCCAAGTGGATCATCCTTGACGGAGACATAGACCCCATGTGGATCGAGTCTCTCAACACAGTCATGGATGACAACAAG
Seq A exon
GTTCGCGGGCCCTGGACTCTAAGCCCCAAGGCCACCCAAGGCAGGGACAACGGGGGCTCACAGGGAGGCGCCTACGGAGCACTCAGGCCCTGCATGCCAGGCTTGGCGCAGGTGGCGTGTCTGGATCTCCACAGGAAGCTATGAGTGAGGGGCACCTTGTCGTGAGACTTTGTCACATGCGTTGTGGTTTTGCATGCGCCTCACCTTACATTTTAGCAGGATGGGTTCAGAGTAAAGGCCTGGGAAGCAGAAATGGTTATGTAGAATTGTCTAGAAGCCATTTTCTAAAAATGCTCCTCAGTTGGATGCAGGAAGGAACACAATACTTTCCAGGATGGGGAGGGGTGATGGTTTGAGAAAGCAGCCCTGACTCCATGCTGCAGCCCTCACGGTGTGGGCGTCTAGAGGCTGCTGGATTCAGGGAAGGCAGAGAAGCCCTGGGCCAAGGGACTAGGGCTGTGGGCCAGGGGTGGCAGGGCTGGCCTGGGCCCCTCCTCCTTGCTCGGAGGTTTGCTCCGAGTAACCCCCACCCCAGAACACCATTGGGATGGCAGGTGTCGCCTTAGGACCCCACGGGCTGCTGTCCCCCTCCTAG
Seq C2 exon
GTCCTCACCCTGGCCAGCAACGAGCGGATCCCCCTGAACCGCACCATGAGGCTGGTGTTCGAAATCAGCCACCTGAGGACGGCCACCCCAGCCACCGTTTCCAGAGCCGGCATCCTCTACATCAACCCAGCCGACCTGGGATGGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:43
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(30.7=100)
A:
NA
C2:
PF077289=AAA_5=PD(25.5=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTCTCCACCATCATGCG
R:
TTCCATCCCAGGTCGGCTG
Band lengths:
273-868
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)