RnoINT0048816 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107080062-107082863:-
Coord C1 exon
chr10:107082698-107082863
Coord A exon
chr10:107080165-107082697
Coord C2 exon
chr10:107080062-107080164
Length
2533 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
ACCTTTCCCACCCAACACAGGTA
3' ss Score
7.94
Exon sequences
Seq C1 exon
GGGTGCTGGAGAAGCCTCTGGAAAAGAAGTCAGGGAGGAACTATGGCCCGCCAGGCACTAAGAAGCTAATCTACTTTATCGATGACATGAACATGCCAGAAGTGGACAAGTACGGCACGGTGGCCCCACACACCCTCATCCGCCAGCACATGGACCACAGACACTG
Seq A exon
GTGAGGGGCTGAGGAGCTTGGAAGCAGGGCCAAAGGGCTACGCCTCCGAGAGGGCGTGGTGTTGTATGGCCACGCCTCTGTGGGAGAGGCTAGTACTGGGCAGCCACAGCTAGGAATAGAGAAGGTGGCAGGAGGCAGGTCAGGGGCTGGCAGCCTATGGCCGCGGAAGGGCCATTCATGTTCTGTGCTATTGCCACGCTCCACAAATATGTCAGTAACTGTGGCCAAGACCCCCATAAGGGGGCAGAGATAGATCCCCACTCAAGGAGATGCATGTCTGCTATGGGAGACCCACGGAGGGCTCTGGGGGAAAAGCCCATCACAGAGGAGGCCCCGATAGGTCAAAGATGCCCCTTTGAGAGCTATAGGGAACCTGGGAGCTGGATACTGTCAGGACTGCCCTCGAGTAGAGAAGCCTGAGCTGAAAAAAGCCATGTGCAAAGGTCCTGCGGCAGGAGGGAATGTGGCACAGGATGGACTAAGGGAGGAAGAAGGGAAGGGTGCACATGGTTGCCTCAGCCTAACACAGGAGACTCTGTCCCAGTGATCCTGAGACACCCAGGTGACACACATAGGAATAACCAGGCCCATTCAGGTCATTTACCATTTTAGGAAGCAGCCCAGGCCAGAGCTGAGGTCAAAAGAACTCCAGAAGCCAGTCAGTGGGTTCCCAGAGACTTCCCCTCCCCCAACCCCCATCAAAGGACTGCCAGGAGCATGCTCAGGGGACCAGGCTGCCTGTGCGAGGTCACAGTCCCACACTGACCCCACAGCCTGCCTTTCCCTAAAGGACGGCCACCACAGCCACCGCCCCAGAGGTGACAACACAGGGAGGGGAGGGGATGGGGTAGGGCTGCACTCCATGGCCCAAGGAAGCCGGGAGGGTTGGAGAGATGGCCCAGAGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTAAGTTCATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGAGATATAAAATAAATAAATATAATAAATCTTTGAAATATATATATAAAATAAATTAACCCGTTTTAAAAAGACATTTGATTAAAAAAAAAAAGGAAGGGGCAAAATACCGTGAACACAGGAGACAGCAGTGAGGTGATGGGGTGCCACCCCCACACAGTGGCTTCCCCAGGGAGGCCGCTGGAGACTCATCGATGGCCCCACACACAGGCCCTTCCCTATTGAGCTCTCCATCCGGCTTTACAGCATCAAACATTCCAGAAGGTTTGTATGGTCCCTAGTGCTGTCTCCTCTCGAGAGGTCCTCCCGCTGGTTAAACTCCAGCTGCAGCTCAGCCCGTGCCTGCCTTCGGACTTTCTCTGGAGAAACCTAAGGAGGGAGGAGAGGGGTGGCTGGATTTGAGTTTTCAGAATACCCCTTGAGGGGCCAGCGAGGACGGCTGACACAGGAGCTTGCCCTAAAGGCTGGCAACCAGAGTTCCATCCCTGGGAACCACCCAGGGGAAGGGCAAAGCAAACTGCCCTCCTGCCATCTGTCCTCTGCCACCCTCACATATGTACCACAGCATGGCCAAACCTCCCTGCAGATGAGGTCCAGGTGGCCCAAGATGGCAGGGACGAAGGGACCCTGCTGTGTCAGGAAGAGGCACTGGATGTCAGTCTCAAAGTAGTGAGGGGGCAGGGAGGGGGCGACAGGGAGTGGCTTCTCAGCCAAAACTTTGCAAAGCACAGCTAAAGGGAACAAAGCAGCTCCCGTCATTAACGTTGGAGTTGTGGGGCTTTGTTCAACATGTGCGTAGGGCAGGCCGACGTAATAGTTAACAGACGGACACACCTGTGCGTACACACACACACACACACACACACACACACACACACGTGCTCAGCAATCACCTGGAGAGCACCAACATCACTAAGGGCCAAGTGGGAAACACACAGAGAGGCACAGTCAGGACAGTGACTTGGCCGAGCACGATGGGGATGTGGCTCGCTGGGTAACAGGCTTGCCTTGCCAGCGAGAGACCCTGTGTTCAGTCTCCAGCACGGAACAGACCAGGCCTAGTGGCACACGCTTGTAATTCCAGCCCCCCGGGAGGCGGAAGCAGGAGAATCCCAAGTTTGGGATCATCCTTAGCCACGTGGGGAGTTAGAAGCCAGCATGAGATGCAGGAGACCTCCCTTCCTCATAGGGCAGGAAGCGGTTTCGGCGTGCCTCAGGCACAGGTGCCCTTACAGGCAGGCTTGCCTACCCTGGCTTCCGCATCCTTGTAGTGATGCTGAGCAAAGGTAGGCTTATTGAGGTACCTAGTTCTCCAGGCCAACATGGCCGACCACCTCCCGGTGAGAGCTGCACCGGAACCCAGAGCTGTGCTCAGAGGGGTTTCTGCCTCCCATCAAAGCTCCGCTCAGCACAGCACACAATTGTCTCTCTCAGCTTGTCTTCCCTAGGCACATATCAGGTGATTTACAGGGAAGGGGGGGTGGCGTTTTCCCACCCTGCGGTGGGATGCTCACACCTTTCCCACCCAACACAG
Seq C2 exon
GTATGACAGGCAGAAACTGACACTGAAGGACGTGCACAACTGTCAGTACGTGGCCTGCATGAACCCTACTTCTGGCTCCTTCACCATTGACCCCAGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.2=100)
A:
NA
C2:
PF127752=AAA_7=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]