MmuINT0050769 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117931769-117934324:-
Coord C1 exon
chr11:117934159-117934324
Coord A exon
chr11:117931872-117934158
Coord C2 exon
chr11:117931769-117931871
Length
2287 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
AACGTTCCCGCCCGACACAGGTA
3' ss Score
6.95
Exon sequences
Seq C1 exon
GGGTGCTGGAGAAGCCTCTGGAAAAGAAGTCAGGGAGGAACTACGGCCCCCCAGGCACTAAGAAGCTGATCTACTTCATCGATGACATGAACATGCCAGAGGTGGACAAGTATGGCACGGTGGCCCCACACACCCTCATCCGCCAGCACATGGACCACAGGCACTG
Seq A exon
GTGAGGGCCTGATGAGCCTGGGAGCACGGCCATGACTCTGTGAGGGCAGGGTGGGTGTGGCCATGACTCTATGAGGGCTGGAATAGGGCTGGGCAGTCATGGATAGGAATAGAGAAGGTGGCAGGAAGCTGGGCTGGTCAGGGGCTGGCAATGAGACCATGGGGTCATGGGGCAGGGCCGTGGCTGTGGAAGGACCATTCATGTTCTATGATATTGCTACAAACATGTCAGTAACTATAGCCAAGACCCCCCCCCCCATAAGGGGTGGAGATAGGTCTGTGCAAGACCTGCGGAGAGCTCTGAGGAAAACCTCAAGGTCTATCACAGAGAAGTCCCTGATGGGTCAAAGATGCCCCTTGGAGAGCTGTAGGGTGGCTGGGAGCCAGACACTGTCAGATTGCTCTGGAGGTACAGCAGCCTGGGCTGAAAGAAGCCACGTGCAAAGGCCCTGCCGCAGGAGGGAATATGGCCCAAGGATGAACTAAGAAAGGAAGAAGGGAGGGGTGCACATGGTTGCTTCAGTCTGACACAGGAAACTCTGTCCCAGTGGCACTGGGACACCCAGGTGGCACACTGAGGAATAATCAGGCTGTTCTGGTCATTTACCTCTTGAGGAAGCAGCCCAGGCCAGAGCTGGGACTAGCTAGGATCAAAAGAACTCCAGAAGCCAGTCAGTGGGTCCCCGTCCCACCCCTACCAGCCAAGGACTGCCAGGAGCATGCTCAGGGGACCAGACTGCCTGTGCAAGGGCATAGTCCCAACACTGACCCCACAGGCAACACTGACCCATGGGACCCAGGCCACCCCGAGCTGTGGGAACAGCCAGAACCTCAGAGGTGACAACACAGTTTGGGGAAGGAAAGGGGCTACACACAATGACCCTCAAGAAGGAAGTGGGAGAGTGAGTGTCATGAACACAGGAGATGGTGGCAAGGTGATGGGGTTCCACCCCACACCGTGGCTTTCCTGGGGAGGCTGCTGGACACTCATCCCCCCTCCACACCCCACAGGCCCCTATTGAACTCCCCATCTGGCTTCACAGCATCAAACATTCCAGGAGGTTCCTCTGGTCTCTGGTGCCCTCTCCCCTCAAGAGGCCCTCTTGCTGGTTAGATTCCAGCTGCCTCAGCTCAGCCCTAGCCTGCCTGCCTGTCATTATTATCCCGAGAAACTCGAGGAAGGAGAGGGGTGGCTAGATTTGAATTTTCGGAAGATTCCTTGGATCTTCTTAAACCAGCAAGGATGGCTCCACAGAGCTTGCCCCCAAGGCTAACAACCAGAGATTGATCCCTGGGAGCCACCTGGGGAAAGGGAAAAGCAAACTGTCCCCTGCCACCCTCACATAATGTTCGCAATGTAAAGTCAGTCCCGGAAGCTGCAAAGTTGGGAGGGGGCAGGGAGGTGCTTCTCAGACAAAACTTTGTAAAGCACAGCTGGACAAAGTAACAAAGCCGCAACAAAGCCGCAACCAAGCGGCTCCTGTGGTTACTTCAGAGTCGTGGGGGTTCCTTCACCAAGAGCCTAGGGTAGGCTGACAGCAGAAAACAGACAGGACTCCCATACCTCTCCCACCACACACCCTCCCTCGACATTGTACTCAGTCAATGGAGTCTTCATCTTGGGCAACACCAGCATCACCAAGGCCAAGTGGGAAACACACAGAGAGGTACAGTCAGGACAATGACACAACTGAGCAGGAAAGGTGGGGACATGGCTCACTGGGTAACGAACCGGCTTAACCTTTGCACGCAAGAGACCCCGGGATCAGTCCCCAGCACTGTATAGACCAGGCCTAGTGGTGTACACTTGTAATTCCAGCCCCTGGGAGGTGGAAGCAGGAAGATGCCAAGTTTGGGGGTCATCCTTGGCTGCCTGGGGAGTCAGAGGTCAGTCTAGGATGCAGGAGACTCTTACTCATAGAGCAGGAAGCTGTTCTGGTGTGCCTCCCTCGCGGCAGGTGCCCTTACAGGCAGACCTGCGAGAACTCTGGCTTCCACATCCTATAATGCTGAGCAAAGGCAGGAGCATCGAGGTACCAGGCAGTGAGTTATCCAGGCCAGCATGGCTGACCACCGCCCCACAAGAGCTGGACTGGAGCCCACAGCTGTGCTCAGAGGGGCTTCTGCCTCCCGTCAAAGCTCCACTCGGCACAGCACACAGCTGGCTCTATCATGCCCGCCAGTCTGCTCAGGTTGTCTTCCTCATAGGCACATACCAGGTGACTTACAGGAGGGGTTTTTCCCTGCGGCGTGTGGTGGGACGCTCACAACGTTCCCGCCCGACACAG
Seq C2 exon
GTATGACCGGCAGAAACTGACCCTGAAGGACGTGCACAACTGTCAGTATGTGGCTTGCATGAACCCTACTTCTGGCTCCTTCACCATTGACCCCAGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:48
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.2=100)
A:
NA
C2:
PF127752=AAA_7=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: