BtaINT0050363 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54368297-54369347:+
Coord C1 exon
chr19:54368297-54368462
Coord A exon
chr19:54368463-54369244
Coord C2 exon
chr19:54369245-54369347
Length
782 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
3' ss Seq
TGCTGGCCTTCCCCACGAAGGTA
3' ss Score
6.63
Exon sequences
Seq C1 exon
GGATTCTCGAAAAGCCGCTGGAGAAGAAATCAGGGCGGAACTACGGACCGCCAGGCACCAAGAAGCTGATCTACTTCATCGACGACATGAACATGCCCGAGGTGGACAAGTATGGGACGGTGGCCCCCCACACCCTCATCCGACAGCACATGGACCACGGGCACTG
Seq A exon
GTAGGCGGGCTGAGGGGTCTGCCACGGGTGGGGAGGCAGGGCTGGGACACAGGAGCGGGCTGACGGGGCTTCAGGCCCGGGGGGTCCGGGGAGGGGGAGAGGTCAAGGCACAGAGGGGTTAGCCAGCCTCCCTGGAGTCCCAGTTGAGCTGAAACGTACACCCAGACCTGCACAATGAGCCACCCTGTTGCCTCCCATTTCAAAAATTTTCTCATTCTCTACAGCATGAAGTCCAGTTTGGCCATTTCACATATAATCGATATTTATTGAGGTTTATGGTGGTTCAGACGGTAAAGTGTCTGCCTACACTGCGGGAGACCCGGGTTCTATCTCTGATTGGGAAGATCTCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTCGCCTGGAAAATCCCATGGCCAGAGGAGCCTCTTAGGCTGCAATCCATGGGGTCGCAAAGAGTCGGACACGGCTGAGCGACTTCACTTGCACTTTCTTTCATTCATTTATTTAGCTGCAGCAGGCCTTGTTCCCACGTGCTCGATACTTGATCTTTGTTTTGGCACGTAGGATTTTAGTTGTGCTGTGTGGGATCTAGTTCCCTGACCAGGGGTTGAACCTGGGCCCCCTGCCCTGAGGGTGCAGAGTATTAGCCACTGGACCAGCAGGGAAGTCCCAAGGTGGTTTTTTTGTTTTTTTTTTTTAAACCATAGGCAAGGCATGACCGGGGTGGGTGGGGTGCCGAGGGTGGCTCCTGGGCGCCAGCGGCAGGGCTTGATGCTGGCCTTCCCCACGAAG
Seq C2 exon
GTATGACCGACAGAAGCTGACGCTGAAGGACGTCCACAACTGTCAGTACGTGGCGTGCATGAACCCCACGTCCGGGTCCTTCACCATCGACCCCAGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.1=100)
A:
NA
C2:
PF127752=AAA_7=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCTCGAAAAGCCGCTGGA
R:
AAGTCTGGGGTCGATGGTGAA
Band lengths:
265-1047
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development