RnoINT0048850 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107031644-107032317:-
Coord C1 exon
chr10:107032306-107032317
Coord A exon
chr10:107031838-107032305
Coord C2 exon
chr10:107031644-107031837
Length
468 bp
Sequences
Splice sites
5' ss Seq
GTTCTGTCT
5' ss Score
-16.64
3' ss Seq
GTCATGGGCTTGCCTGGCACCTG
3' ss Score
-0.86
Exon sequences
Seq C1 exon
GTTTGCCTGGTT
Seq A exon
CTGTCTGGAACTTTTGTTGAAACCAGAAACAACCTGCTGAGCCAGGCTTAACACACAAACCTGTAATCCCAGCACTCCGGAGCTATGAGGCAGGAGGACCTCAAGTTCAGGGACAGGCTGGGCAGCCTGGCATGGTGTGCCAGGACGGACTGAGATGTACTGCTGGATGGCAGTGGGTGACCACTGTGTGCCAATGTGGGGGGGGCGTGGTGACAGTACAGTTCCCACAGAGGGTAAATCGGTCCCATGCCCACGAGAGCACCCAACAGAGCAAGAAGCTGGAGCAGTTGTGCCTGGAGGCACTAGGCCACCAGGCTCGCCGCACTCACAACTCTGGACACACGTGACTACTCCTCATGACCCTGTGTTTCCCCGCTCCAGACCCAGGCAGGTCTGTGAACTCAGGTTTGAGCAGCGCCCCCACCCCCATGCTGCCTCTGTTGGTGATGTCATGGGCTTGCCTGGCAC
Seq C2 exon
CTGGTTTCCAGGTGAAGGCTGTGCTGGATGACATCCTCGAGAAGATACCAGAGACGTTCAACATGGCTGAGATCATGGCCAAAGCTGCCGAGAAGACACCCTACGTGGTCGTTGCCTTTCAAGAGTGTGAGAGGATGAACATCCTCACCAATGAGATGCGGCGCTCGCTGAAGGAGCTGAACCTGGGACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(0.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]