MmuINT0050801 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117886832-117888169:-
Coord C1 exon
chr11:117887987-117888169
Coord A exon
chr11:117887015-117887986
Coord C2 exon
chr11:117886832-117887014
Length
972 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TGCCCGGCACTGGTTTCCAGGTG
3' ss Score
6.87
Exon sequences
Seq C1 exon
GGCTACCACGAATACATCGATGAGAACCTGCCCCCCGAGAGTCCTTACCTGTACGGCCTGCACCCCAACGCAGAGATCGGCTTCCTGACTGTCACCTCAGAGAAGCTGTTCCGAACCGTCCTAGAAATGCAGCCCAAAGAGACAGACTCGGGAGCAGGCACGGGGGTGTCACGGGAGGAAAAG
Seq A exon
GTAGGGGCTGTCCCCGTCCCTGGTAACGGGTGGGAGGTGGCCTAAGCAGTGGGAGGCACAATGCAGCCCTGGCTGAAGACAGCACCTGGGCAGCTTGTGAGGCAGCTCCGTCCTGTCTTGGGAACTAAATTCTGGAATCAGGGTGTGGTCTACAACTGGCCCCAGGCATCACTGGGCTAATACTCACACTGGGCACAGAACTCACAGAACTTTGGTGCAACAGGACGGCTCCTCCAGTACAAGGAGCTCAGAGGGTAGCCTGGGCTCAGAGGGTAGCCTGGGCACAATCGGTCAGGTGGCTGCATCTCAGAGCACTGTGAGGCGGCGCCTCTGCCCAGTGTGCCTCTGCACCCACTTTCTTACATTGTGGGAAAGATCTGTCATACATCAGTTAAGCATGGAGCTAAATAACAAACATGTTAGAACAGGAGTCCAAAGTCCCTCCTTGCTATTCGGGGGTCTGGAACTTTTATTGACCTATTATTTGAAACCAGAAATCTGCTAGCCAGGTGAACTGCACACACCTATAATCCCAGCACTCCAGAAGCTGAGGCAGGAGGATCTCAAGTTCAGGGCCAGACTGGACAGCATGGCATGGTGTGCCAGGTCAGACTGAGATGTACGGATGGACGGTGGCGGGTGGCCACTGTGTGCTTTTGTGTGTGAGGGGATGGTGGTGACAGTACAGTTCCCACAGAGGTAAATCAGCTCTGTGCCCACGAGAGCACCCAGCAGGGCACCTCGCACCAGGCTACCAGGCCCGAGGCACTCGGCTCTGGTCACATGTGGCTGCTCCCCCAGGCCCTGTGTTTCTGACTCCCCATCCCTCTGGCCCCTTCCCCCTCTGAGACTCAGGCAGGACTCCTCCCCGATTCTGCTGGGGTGCTGCCTCGGCTGGTGACGTCACAGGCTTGCCCGGCACTGGTTGCCTTGGCTGGTGACGTCACAGGCTTGCCCGGCACTGGTTTCCAG
Seq C2 exon
GTGAAGGCTGTGCTGGATGACATCCTGGAGAAGATCCCAGAGACCTTCAACATGGCTGAGATCATGGCCAAGGCTGCTGAGAAGACCCCCTATGTGGTGGTCGCCTTTCAAGAATGTGAGAGGATGAACATCCTCACCAATGAGATGCGGCGCTCACTGAAGGAGCTGAACCTGGGACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:77
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGATGAGAACCTGCCCC
R:
GGTTCAGCTCCTTCAGTGAGC
Band lengths:
342-1314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: