DreINT0058357 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10353929-10358203:-
Coord C1 exon
chr6:10357961-10358203
Coord A exon
chr6:10354112-10357960
Coord C2 exon
chr6:10353929-10354111
Length
3849 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
AAGCATTATTCCTGTTCCAGGTG
3' ss Score
7.5
Exon sequences
Seq C1 exon
TTTGACAGGAAGATGTCATTGGCCCCGGGATTTATTGTACCTTCTAACCTGGATTACCAGGGTTACCACGCATACATAGATGAGATGCTGCCCCACGAAAGCCCAGTGCATTACGGTCTGCATCCAAACGCAGAGATCGAGTTTCTCACAGTGATGTCCGACAGCCTCTTCCACACTCTTCTAGAGCTTCAGTCCAGAGACTCCAGCATGGGGGAAGGAGCTTCGCAGACCACTGAAGAGAAG
Seq A exon
GTCTGTTTCTCACTGCACATCTTGGTTTGGTGAGAGACTTTCATAGAGGTTTAAAGTAGGGCTGCGAAATTACCATTATCCCTCTAATAGTGTATATGCAATATAAAGTTGAAGTCAAAATGATGAGCCCTGCTGTGAATTTTTGTTTTATTTTTCAAATATCTCCCAAATTATGTTTAACAGAGCAAGGAAATTTTCACAGTATTTCTTATAATATGTTTGATTTGTTTTATTTCAGCTACAATAAAAGCAGATTTAAGGTCAATATGATTAGCTCCCTTAAGCTATATATTTTTTTAATTGTCTACAGAACAAACCACTGTTATACAATAACTTGCCTAATTAACCTAGTTAAGCCTTTAATTGTCACTTTAAGCCAGGGGTCTCAAACTCGCAGCCCGCGGGCCATTTGCGGCCCTCAGTGCAATATTTTGTGGCCCGCGCCGACCGCTGTACTCTGACAGAATCAGCGGAGCGGGGAGAGAGAGCGCTCCCCGCTCCGCTGATTCTATCCGTACACAGCGCGCTTGTCACTCAATGTGCGTTGTCGCGCGCGTTCTGATCAGCTGTGCTGTCGCGCGCCTACTGAAGGGCGGGACCGAGGGTGTCTCGCGTCGCGGGGGCACTTTTGATCATTTTGGAAGGGCACTTTCTATGCAAGACTAAAAAGGGCATGTGCTCTGCACAGGTTGAGCCCTATGTGTGCACGTGCCTGCCCTGCATCTTATATATATTGATATTATAGGTAGATACAGACTGGTACAGACTGATGTGACTGGAGTGGGGTGGGGGTGTTTTATTTATACATATATACGCCTTTTTTTTAGGTGAGGGAATGGAAGTTTTGAGTGAGTTCCCCCACTTTTTTCCCTAGGACTTAGGGATGTAACGGTATTGTAAATACCGTCATACCGCAATATTAATTTTTTTCGATATTACCGAAGTCGCATGACTCGGTAAAACTATAGGTCTCCTGAGAAAATTTGCTCAGGCGAATGAAGCGAACGGGACGTAGCTGAAACTTCATTTCCCATCAGCCCCGGCGTGGCCATAATCCTTTGCGGTCTGTTGTCGCTACAGATCCAGTAATGCGGAAATGGAGTGTGCTGCTAGTAGCGGAGATGAAAAAAAGATGGAAATGATCGAACCTAAAGCGGGTGTTGTCGCCGCGCGCGTGCTGAATAGCGGTGCTGTCGCGCGCGTTCTGATCAGCTGTGTTGTGGCGCGCGTTCTGATCAGCTGTGTTGTGGCGCGCGTATTGTAAAGCGCCGAGGGGGGGTTGAGCGCGCATATTCAAGAGAGGTGTTGTCGCGCGCCTACTGAAGGGCTGGATTGGACGGAGGGTGTGTCGCGTCGCGGGGGCACTTTTGATCGTTTTGGAAGGGCATTTTCTATCCAAGACTAAAAAGGGCATGTGCACTGCACAGGTTGAGCCCTATGTGTGCACGTGCCTGCAAGTTGGGGAATACGACTAATAAAAGTCATGGGGACTGCAGAAACACAGCACACTGTTCAGATTGATTCAGACATTGACTTGTACCGCAAAGAGACCTCTATCTCACTCATGATTTGTCTTCTCAAGTGGGGGAAAGACAATGCACAATGTTACCCCACTGCTGTCAACCTGGGCCAAGTCATATCTCTCTTGTTCCAGAAACCTCAGTCCCAAATGAGAGGGGTTTTTTTCTGTTGCAGGGGACATTGTAAATGCCCAGAGATACCAGCTTTTACCAGATTATAATTATATGATAATTTTCCTTTAAACCCATCTCTATCTAAGTGAGTGAGTGATTAAATGTTGAATGTGATGAGTTTTCAACAATACTAAATTGAAACTTTATTTTTTTACATGGTTTAATATTTTTTTGTTATTAAAATTGAAGTTAGTGTTTCAAAGCTTACAGATAGATGGCTAATTTGTATGTCATTGACACTTTTGGCACTTTTTTTGGAGTATTTTCAAAAGTTTTTTTTTCCTGTAAATGATTCAATAAATACCGTACCGTGACATTCATACCGAGGTATTACCGAACCGTGAAATTCTGATACCGTTACATCCCTACTAGGACTTCAATAAGTCAAAGTACAGGTCTAGACTTAATGGTGATCATCTTCAAGCCATACTGAGGGTCTCAACTGCTTCCACTCTAAAGCCAAATGTGGTTCAGATTTGTGAGAAGAAGCGCTGTCAAGTCTCTGGCAGCAAGGAGTAGGCAAAAGATGCCATGTTCAGAAGAACTGTTCATAATCTTCACTCAATGTTTTATTAATGTTCAGGACACTTCATGTTCAGAAGAAATAATTAAAACTGTTAATAATGACATTTGAGGACTTTTTTTTGTGAAATCCCTTATGCGGCCCAGCCTCACCCAGACTTTGCCTCCTGTGGCCCCCAGGTAAATTGAGTTTGAGACCCCTGCTTTAAGCTGTATAGAAGAGTCTTGAGAAATATCTAGTCAAATATTATTTACTGTCATCATGGCAAAGATAAAATAAACCAGTTATTAGAAATGAGTTATTACAACTATTATGTTTAGAAATGTGTTGAATAAATTTTCTCTCCAGAAATTTAGGGAAAAATATAAACGGGGGCTAAAAAAATTTTCAACTGTCTAAATTTGACCAATCAGATGGGACCTATCTATCTTTATCCCCACCTCTTCAGTAAATGCTGTTCTGCAATTGGCTGAAAAAAATACTATTGGCGGGAGTCGAGACAAGAGAGGAAAATGACAGCAGCCAATCAGAGTCAGAATCTCTGCTGTGGTTTTCACTCAGTAGTGTTTTAAAGACTAATTGTTTGCATCTTGCACCTAATCTGAATTGGAAGTGCATATATCTGAAAAATATCTTTCTTCTGTTCTTTATTGGCATTACATAAATAAAAGATGTAAAAGCATATCTAATAAAATAGCTTTTTTTTCTAGGGAAACGTTATATTGTAAGAAATATCGTTGTCACGTATTTCATGTGTCGTGCAGCCTTAAGCCTGCTTTATACTTCTGTGTGCTGTTTCTGTTGCTCTGTAATAACACTTCAGAAACGCTAGCTGGCTGTATGTTTACGTTCCTCTGTGTCGAGTTACTTCACAGGTGTTTTGTTTTTTTCTAAAAGCTACCTTAATTTACAAGTGACCCAAACTCTTTTTTTTTTTTTGACTAGAATCGGCGGATGTGCAACGACTTTAATCATTAAGTAAACACGAAACAACAGTCTCCATCTGAAGCTCCTTCACGGGACTCCACGCTTGTAAACACTCGCTGCATCAGGCTCGCGCGGCTCTCACCTCCGCCCATGCTTGTCAGCGCTACCAAGCCTAACAATCACAGAGCTTGCGCTACGCATCGTTGTGACATGTAGTTACATTTTTTGAGAGGTGTGCGTCAGCGTCGTCGGAGACCATGGCGAGGGCTATGCATCCATGCATAGGCTGTGCTGTAGCATACGCGTGCGCTTGATGCAGAAGTATAAATTAGCTTTTAGTTTAAAGGTGCATTTTGGAGTCTGCTTCTGTCCACCGGGGTCACATTTCACTCACGAGTGCATTCATTCATGCTCTGAATGAATGAATGAAATATGTGGTTTTCCATCAAGGCAACCCGGGGTGCTGAAATATAGTTGGCTAAACTGGCAGTGGGCGGGTTAAAAGAACCAGAACAAGTCAGACATTCTGGCACGGAAAACACATTTTCAAAGCAGAATATCTGACTTCAGCATTGTTTTTTTAGACAATCAAGAATGTTCACTTAACATGTTCGTAAATATCTGGAAACATATTCTGGTATTTTTATGCTTTAAAAGAGTCAAAAACTTACGCACAGCACCTTTAAAGCATTATTCCTGTTCCAG
Seq C2 exon
GTGAAGACGATCCTGGATGACATCCTGGAGAAACTGCCGGAAGAGTACAACATGTCTGACATCACGTCTAAAACAGCAGAGCGCTCGCCCTTCATTCTGGTGTGTTTCCAGGAGTGTGAGCGCATGAACATGCTGATCAATGAAATAAGACGCTCACTCAAAGAGCTGGATCTCGGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:70
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]