Special

HsaINT0049365 @ hg19

Intron Retention

Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21932043-21934423:+
Coord C1 exon
chr7:21932043-21932285
Coord A exon
chr7:21932286-21934240
Coord C2 exon
chr7:21934241-21934423
Length
1955 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
CTTTGTGTTACTGATTTAAGGTT
3' ss Score
6.79
Exon sequences
Seq C1 exon
ACTGAAGATGAACTGATGCTGGCACCAGGTTTTGCTGCCCCACCCTACCTAGATTATGCAGGCTACCACCAGTACATAGAGGAGATGCTTCCTCCAGAAAGCCCGGCACTGTATGGCCTCCACCCAAATGCTGAAATAGAATTCCTGACAGTGACATCCAACACTCTCTTCAGAACTTTGCTGGAGATGCAGCCCAGGAATGCACTCAGTGGTGATGAACTGGGGCAGTCTACAGAAGAAAAG
Seq A exon
GTAGAGGGTCTTTCCTTCCTTTTCTTTTTCATTGAAGTATAACTTACTTGTACTGAAGTCTACTAATCTTAATTGTGCAAATCAATAAGTTTTTACCTAGGTTTTACTCATACAACCACCACCTAGATCAAAATAACATTTCCAACACTCCAGAAGGATACTCATGCCCCTTATCAGTCAACATACCCCTCACCTCCCCCAGAGATAATCAGTATCTTTACCTCTATCATCACAGATTAGCTTTACCTGATTCCAAATATATGGAATCATACAGTGCGCATTCATCCATGTCTAACTCCTTTCATTCTGCATTAGATTTGTGAGATTCATCCATGTTGTTCATGTACCAATGGTTCATTTTTGTTTTGAATTCTATATGAATATAAAATTCTTCATTGTACTGTGAATGGATGTTTGGGTTGTTTCTTGTTTTTCACTTTTATAGAAATATCACAACCATGAACATTCTTCTGCAGTCAATATGCAAAGGTAACTCCCAAAGGCATCCATTCATACTACCCATTTCTCTATACCCAGAAGTGGGATTGCCAGATAACAGGGTATAATGTGTAGCTTTAATAGTATTCCCAATCAGTTTTCTCCAGTGGCTGTACCAGTTACTTTCCCACCAGCAGTGCGTGTGAGTTCCACTTGCTCTATCTTTTTTGTGATTTTGTAAGGGTAATGATATCTCACAGTGGTTTTAATTTTGCAATCCTCAATTGAGGAGTAATATTGAGCATCTTTTCACATGCTTATGGCCGTTTGGATATACTGTCTACCTCCACTGTAAATGAGTTTAAGATTTCAGGACCTGATAAATTGCCGGTCAGAGTGATGCCAGCTGGCAGGCATGATGTCAGAACCAGAGGCAGTAGTCTGAGAAAGCAAGGAAAGAAGGAAAGCTGCCTGAGGCTAAGGACAGGCAAAGTTCCTCCATCTTTTCTCCTTTCTAGATATTGACTGGTTTTTCCAGCTCGGTGGAGCTGTCTACATAGAATTAGTATGCATGTCTGAGTACCATGTGCATACTCATACCTGTAATATATGTCTTTCATTCTTTCAGAGCAACAATTACAGAAGATAGAAGTTTCTTTGTTAAAAATGTTGATGTAAATTGGTCTAGGAATTTTAGGATGCCGTGGTTGGGAGGGCAGCATCATAGTTCAGCAGAATTTGCTTACGCTTAAAAGGCTTATTTGGGTTATGTGACTTTTATTCTATTTTATTTTTTATTTTTTGAGACAGTTTCATTCTGTTGCCCAGGCTGGAATGCAGTGGCACCATCTTGGCTCACTGCAACCTCTAACTCTCGGATTCAAGCGATTTTCGTGCCTCAGCCACCCAAATAGCTGGGATTACAGACATGCTCCAACATGCCTGGCTAATTTTTATATTTTTAGTAGAGACAGAGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACTTCAAGCGATCTGCCCATCCTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCAGCCCCTGGTTTGTGTGGCTTTTAAAAGGATCTTTTTAATTTAGCAGATTATAAAATATGGTACCCTAATAATAGGCTTCTACTTCCTCTGATCATATCTTTACATATAAATAACATGTAGCTGATGACAGTTCTATACTCCCTAAATGTTAAGTGAGTAAACTGCAAACAACTGTAGCTCCTTCTTGACCAGATTTGGGGCTCCATGGAAGGGGAAGTGCTGGCACTGGTACAGAGGCACCAATGAGGCAGCTGAGGGAGTTGGCACTGCCATGCTGCCCACCTCCTGGGAGCCGTAGGCATCCTTCACATGCATTTGCAGGCACCTTCGGAAGTCGTATGATATATTCTGTAACTTCAAAAAGTAGAGGATATACACAGTCACCATGACGAAAACTGAAATAGAAAGGAGCTAAATCTTTGTGTTACTGATTTAAG
Seq C2 exon
GTTAAGAATGTCTTGGATGACATTTTGGAGAAACTTCCAGAAGAGTTCAACATGGCAGAGATAATGCAAAAAAATTCAAATAGAAGCCCATATGTTCTTGTTTGCTTCCAAGAATGTGAGAGGATGAATATTCTCATTCGGGAAATACGTATATCACTTGAACAACTGGACCTTAGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-DNAH11:NM_003777:77
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.086 A=NA C2=0.016
Domain overlap (PFAM):

C1:
PF0302810=Dynein_heavy=FE(11.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.5=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCTGGCACCAGGTTTT
R:
TCCTCTCACATTCTTGGAAGCA
Band lengths:
355-2310
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development