RnoINT0048712 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145790231-145793459:-
Coord C1 exon
chr6:145793217-145793459
Coord A exon
chr6:145790414-145793216
Coord C2 exon
chr6:145790231-145790413
Length
2803 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ATGTATTTTAACGTTTTAAGGTT
3' ss Score
7.99
Exon sequences
Seq C1 exon
ATTGAGGATGAACTCATGCTGGCACCAGGATTTGCAGCCCCTCCCTACTCTGATTATTCTGGCTACCACCAGTACATAGAAGACATGTTGCCTCCAGAAAGCCCGGCACTGTATGGCCTCCACCCCAATGCTGAAATAGAGTTACTAACAGTGACGTCCAACATGCTCTTCAGAACTCTGCTGGAGATGCAACCCAGGAATGCAGTCAGCAACGAGGAACAGGGGCAGTCCACAGAAGACAAG
Seq A exon
GTAAGGAGGCCCTTCTTGTTCTCTTCTTTAAAGTGAACTGCATGAGTCTCAACTATTAGTCTCTGTTAAGCTTTACCTACGTCGACAAGGTGTAAAACATTTCCAACTGCCCGAGATACTCATACTCTTTGTAAGGATGGGTACATCTTGCTCCCCAAAGATAACTGGTATCCTGACCTCCATAATCACCTATTGTATGGTTATACAGTATTTATGGCCAGGCTCCTGACTCCACAGTTCAGATACCAATGGATCATTCTTGTTTTCTGTTTTATCCTAGGAATATTTGATTTTTATTTTACTGTGGTTAGGTATCTTAAGTGGCTCTTGGGTTTGCTTTACTGTTATGAATGTTCATGACCATGACCCCATATGATCCTTTGCCAAAAGACAAACACTGACTTCCCAAGCAGTTGGTAATCTGGCATTCTTTGTGCTCAATAATGGGATTGCCAGATGAAAGGTTTGAGTCTCCGGATACGGTGCCTCCTTTAGAGTCTGTTAAGGATAAACGGTCTCTGAGTACTTATAACTCTGTGTTCCTTGACTGGGTTATGGTGCTCTTTTCACATTAGATGGCCTATGTATGTATGCATATATATATATACATGATATATATACATATCATATAGATATCACACATACACACACACACAAGGTATTATTTTTTACTTGCTCAACTTTCCTCTCTCCTTTTCTTACAGACTTGTGTAACTCTTTATTCTACATGCATATTCTCTGTCAAGTGTATGACTTGAATGACATAATCTCCAAGTCCACAGCTGGCCCTTCATTGTGAGGGGAGGGGCGCATGGGGGTACAACAGACCATATTTAGGCGTGGGTATGTGGGAAGCTGGGAGATGGCAAGTGTTCTGCTCTAAACCTCTCCACCGTATTCCTTTGAGATAGGGCCTCACTGGCCTGGAGCCTGGCTGGCAGCCAGCAAGTCCTAGTGATTCTCCTGTCTCTGCCTTCTACAGTGCTGGGGGTCTAAGCACCCAGCTTTTTATGTGGGTGTAGAGATCCAGGTTCAAGACACCTGTCTGTGCAGCACATACTCTTACTTTCCGGGCACACTCCAGCCCCAGCCCTTCACTGTTGCTGTAGTTCTTGCTGCCATTTTGTTATCTCCCCTCTTATATATGTCTCTGAAGATTTTTATTTATTCCATTATACGGAATGTTGGAAATGGAGGATGATATTTCTTACATTAAAATCTTGTTTCTCGTTACTTTAAACCCTGAATAGATCACCCCACCAAACGAATCAGCTCTTATTCTCCTCAAAATTATTAATCAAGGTGCGACTGCCAAAGGTTCCGGATGCTCAAATGGCACTTGTTAGCCTGAACTCTAATTATAGTGAAGTCCAAGAATATGACCGTATTATTTCTTGTCTTCTTTGAAATAAGGTCATTTACTGGCCTACTCCTAACTTCAAAGAAACCGTTCATGTTGCTGTATCCTGTATACAAACATCTTTGCTACAGGAATACTACATCATAGGATGAACATGGAAACATCCTCCCCTGTGGGAAGACATACAACATTCATAGAAGCAGAGGGGTAGATGACAGATATCCAACTCAGGGTTTTACATTCCCAGTCTCTCCAGGAGGGAAGCCAATCAGGAAGCAGAAAATGCAGCACTTGTGAAACATGATGCCTCAGTACTCAGCCAGACCAGAAGCTCAGAGCCAAGGCCAGTTATTAGGTACCAGATACTAAAGATCATACTTTTCCCTGGGTTGTTCAATATATGAGGGTTTGGAGAGGTATTAGGATCTATTTTAGAGATAAGCTGAGGTGACTTGTCAAGACTCAACAGGTAGAGAGGGTCAGGGAAGGACATGAAACCTGGGGGACTCTTAAAGCCATACTGCTGTCTAACTCCAGGGCTGTTGCACCGCCTATCCTGAGTGTGACAGCAATTCCTGAGTATGATGTTGGGACCACTGAGGATCATCTGAGAAAAGAGGGGACATGGGAAAGCTGCTTGGGGATGACCCACCCCTCCCCACCCCCAATTTTTACCTCCTATTTTTGACTCATGGAGGCAGGGTCTCATTGCATATCTCAGGCTGGACTTGAACTCATGATCCTTCTGTCTCATGAAGACTAAAATCATAGGAAGGTATTTCCCAGTCATCTGCTTCTAGATAGTCACAGGCTAGCTCAGTAAAGCTACTGACAGGCACATTTTCAAACCAACAGTCATGTTCTACTCTCTCATCTTTACAGTTGCACACAAATGCCATTTAGTTGGTAATTCTTCTACTCCTTGAAACTGTCCACAGCAGGATCTAGCAGAGAGCGGTGCCTAGTGCTAATGCAGCAGCTCCGACCAGAGGCTGTCAGAGGCTGTAGACATCTTTGGGAGCTGTGTGCTCTATTCTGAGACTTCAAGAAGTATGGCCTATAGTCACTGTGTTAGTTAGGGTTTTATTGCTGCGAAGAAGACACCATGACCACAGCAGCTTTTGTAAAGGAAAGCACTTAACTGGGGCTGGCTTACATCTGGTTAAGTCTATTATTATCACGGTGGGGAGCATGGCTGCATATAGACAGAATGGTGCTGGAGAAGAAGCTCTGAATTTTATAACAGGCAGGCAACAGGAAGAAATAGACTCTGAGCCTGGCTCGAACACTTGAAACCTCAAAGCCCCCACCCAAATTACACACTTCCTCCTACAAGGTCACCTCCTAATAGTGACACTACCTATGAGCCTATGGGAGCCACTTTCATTCAAACCACCGGTCACCAGGAACAACAAAAATCTCTATGTATTTTAACGTTTTAAG
Seq C2 exon
GTTAAGAATATCTTGGACGACATTTTGGAGAGACTTCCAGAAGAGTTCAACATGGCGGAGATAATGCAAAAGAACCCAAATAGAAGCCCGTATATTCTCGTTTGCTTTCAAGAGTGTGAGAGGATGAACGTTCTCCTCCGGGAAATCCGTGTGTCGCTTCAACACTTAGACCTTGGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:84
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]