GgaINT0127399 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1191656-1194185:+
Coord C1 exon
chr18:1191656-1191826
Coord A exon
chr18:1191827-1194002
Coord C2 exon
chr18:1194003-1194185
Length
2176 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
CCGCTCCCTTTGGCACGCAGGTG
3' ss Score
7.61
Exon sequences
Seq C1 exon
TACATAGATGACACCCTGCCACCGGAGTCTCCTTATCTCTATGGCCTCCACCCCAACGCTGAGATTGGATTCCTTACCCAGAGCTCGGAGAAGCTCTTCCGCGTCGTGCTGGAGATGCAGCCCCGCGACAGCAGCATGGGCGAAGGAGGAGTGGTGACCAGGGAAGAAACG
Seq A exon
GTGAGAGTGGTTGAGAAAGGGGCTGTGTTTATTGGCTGTCCTGCTCCTCAGCAGCCCTCGGTGCTCAGGTCTGTCTCACAACTGCTTGCTGTAATGTCTTCTGCCTTTGCCAGATGCAAACCGGGTGTCTAAAACCGCCAGCCTCATATTATGCAGAACGTTGCCGCAGTGGGATGTAATTGGAGTATTGTCAGTAATAGGACAGTGGCTTTTAATTACCCCCTGAACTGCAGTGCCTTCATTATCATCCTGCAAAGACGTTGCAAATAAACCTTCTGTGGCCTCCCCTACCTCTGAGCCACCGGTCCCCATGCACCAGGCTGTGACTGGCATTCCAACAGCTCTGCACACCATCTGCCGTGCACCACGTCCCGCCCAGCTCCCAGGGGCTCTGTCATTCCTCATTTCCAGCCGAGCCCATCCGCTGTGCCCGTGTCTCAGACTGATCTCAGCTCTTCCTCTTGAAACTCACAGCTCATTAAAATCTGGCTCTAGCATTCATACCAGCATCTGAAACCAGCCAACACTTGCTCCGTTTTTGATTTCTGCAGACTTAAGTCTTCTTTTTCAAGTCCTGCAAATTAATGAGTGGCTAATAGAAAGTGTAAGTGAAGGCTCTGATTTCACACATGGTTCCTTTGGCTTGCTGTGCTGCTAGGGCACTGCTGTCCTTGCCTGAGGGTCACTCAGAAGGGGTGGACATGGTCAGTTTTCAGTTTGTGCTGGAATTTGAGGTGAGGTGACTCTAACCCAGAGTTAGCAAAGCCAAAGAAAACGCTCAAATGGGAATAATTCTCCTTCTTTTTGCCAGTTAATTACAATTCAGCTCCTTGGCCAGAGCAGAACTATCAGTGGGTGATCCGGCGGCATCACAGGGCTTGGCTTTGTTGCAGATTCCTGCAGACAGCCAGGGAGCCCTCGTGGGCTTTGTGATCCCTGAGGGAAGCTGCCTGGAGGCAAGCTGAGCATGGCTCTGCTGCACTGCTTCCTGCCTGGGGGATGCTCCCACAGCTCATGTTCTTCTGGGAGCGAAATCTCTCATTACCTGACTTGTGACTGGCACTGGCCATGCCCCTTTCACTCAGTCCTTGCAAGAGAGTGAGGACAGAGTTCTCTCCACTCCCCCATTTGAGGATTTCTAGCCCCTTATTTAGCTGAGGTGGTTACAGAGATCTTGCACAGAGCTGCTGGGAAGCTGTCCTTTTCCTGAGGCTCTGACGAGTCCAGTTACTCCCACAAGTTTCTGAGGCCACATTAGAGAAAATGAGCCATCATTGTTGTGAACAAAATCAGAGCCAGAGCGATTTGCAGGGGAATTTCAAATTACAGGGTATTTTGATACTGCACCTCAGGTGCAGCTCAAGAGCTTTTCCAGCTAAGCTTTAGCTTCAGCTTCAGCCACCTCACTGGCTGCAATAGCAGCCCACACTTCGTCATTTCTTCATAGCTCCGATGTGTGCGTGGAGGGTTTGGGAGAGCAGCAGTGGGAGTGCATCAGAGTAGGGTCAGAATATGAATGTCAGAGGGCATGGCAATGAAATTACCCAGGGGCTGCCTCTGGCAGTGGCTGGAGGCTGTTGTTGTCACCCACTCACCAGCTTTGTACATCAGATTTTGGAAATGTAACTGCATAGCGCACTCCAGAAAAATCAACTTGGTTTCCAAACCGAGCTGAGTTGGTGACCTGAAAACAACTTTGTTTCATTGCACTTTTCTTCCACAGCTCTATTAGTTCAGAACGCGGCTTAAAATTCAGTTTGATATAATCGCCTCTCTCTATCAATATACCACAGAAAAGCAGCTCATGAGCTCAGTTATCCTGAGGCTCAGCTGAGATTACAGCCCCATCAGTCTTCTTGCATCGAGTCTGACCTTAGAAGAAGTGAGAGTGCAGACTTGAGACCCAAGGAGAGAGAAGAACATTACGTGTCACCCTGACATTTTTAAGCCATCATTTTGAACACATCTCATCTGACATTAACTTTGTAAGCATTTGAATTTTAATAGGATGGGGCAAGGTCTTTGAAAGGTGTGGCGCCCAGCGTAGCTGACAGTGATTGTTTTTGGAGACAGCAACTGGCAGATGGAGTTTTCATCCCGTGTTCAGACAGCTGTCAGTTGGAGAAGCCCCACAGGTCATTCACTAACAACCCTCTCCGCTCCCTTTGGCACGCAG
Seq C2 exon
GTGAAAGCTCTTCTGGATGAGATGCTGGAGAAGCTGACGGATGAGTTTAACATTGCAGAACTGATGGCAAAGGTGGAAGAGAGGACACCGTATGTTGTGGTTGCTTTCCAGGAATGTGAACGCATGAACAGCCTCACCAGTGAAATAAAGAGCTCTCTCAAGGAACTGGACCTGGGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.0=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]