RnoINT0049295 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52359402-52364588:-
Coord C1 exon
chr10:52364418-52364588
Coord A exon
chr10:52359585-52364417
Coord C2 exon
chr10:52359402-52359584
Length
4833 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGTTTTCTGTCATGGAACAGGTC
3' ss Score
8.01
Exon sequences
Seq C1 exon
TATATTGATGCTGAGCTGCCCCCTGAGTCTCCCTACCTCTACGGCCTCCACCCAAACGCAGAGATCGGCTTCCTGACCCAGACATCGGAAAAGCTCTTCCGAACCGTGCTGGAGATGCAACCTCGGGACAGCCAGGCCGGAGATGGAGCTGGCAGCACAAGGGAAGAAAAG
Seq A exon
GTGAGTGTGGCTTGCAATAGTTTAGGGAACCCAAGGCTTGCAAGTAGATGCCTTTCTGCTAATATCATCCGTAGTGGTAGTGTGACTAATATACACAAACCAGCTTAGATGCTCGCCTGCCCCAACAATCCCTCTCTCCCTACTTCAGCCCATCCCTGAGCCTCCGATTAAATCAGAGGAAGTCCTTGCCTTTGTGTTCTGCCAGTTCAAAGTCAGATTTTTGGTTTTTGTGCAGAAATAAGGGAAGGTCAGGGCTAAGCAGGAAGGGCTTGGGAGCTTTGATAGCAACTTCCAGATTCTTTGGCAAAGTAAATAATGATGCTGCAGAGTTGGCTGTAAAACCCCTCTCCACTCAGTTACTAACCAATAAGAAAAGCGATACTATCTCAGTGACATTAAGGCAAGCAAAATGTCATTTTCCACAACGCTAAGGGTTTTCAAATGCCCAGGGTGTGAGACAAGTTGGTTACTCTGGCCGATCTTGCCTTTGGTTTCAGTATATTGATGCTGAGCTGCCCCCTGAGTCTCCCTACCTCTACGGCCTCCACCCAAACGCAGAGATCGGCTTCCTGACCCAGACATCGGAAAAGCTCTTCCGAACCGTGCTGGAGATGCAACCTCGGGACAGCCAGGCCGGAGATGGAGCTGGCAGCACAAGGGAAGAAAAGGTGAGTGTGGCTTGCAATAGTTTAGGGAACCCAAGGCTTGCAAGTAGATGCCTTTCTGCTAATATCATCCGTAGTGGTAGTGTGACTAATATACACAAACCAGCTTAGATGCTCGCCTGCCCCAACAATCCCTCTCTCCCTACTTCAGCCCATCCCTGAGCCTCCGATTAAATCAGAGGAAGTCCTTGCCTTTGTGTTCTGCCAGTTCAAAGTCAGATTTTTGGTTTTTGTGCAGAAATAAGGGAAGGTCAGGGCTAAGCAGGAAGGGCTTGGGAGCTTTGATAGCAACTTCCAGATTCTTTGGCAAAGTAAATAATGATGCTGCAGAGTTGGCTGTAAAACCCCTCTCCACTCAGTTACTAACCAATAAGAAAAGCGATACTATCTCAGTGACATCTAAGGCAAGCAAAATGTCATTTTCCACAACGCTAAGGGTTTTCAAATGTGATGGGCCACAGTTGTGAGACCTAAAACAGAAGGCCTAGTTATCTCTGTTGGTAAAGGTCGAGTTGGTAGAACAATTTGACAAGAGCTGCCAAAGTTCAAAGTGTTCCTATTTTCCACTCATGATTCTATTTCGTAGAAACCACCCAGCGAAAGCACCAGAGTACACAGATTTTATGATGTTTTTACATTTATTTATTGCAGAATTTTTATGCTGAGGAAATGGTGAATAAAACAATTACAAGTAGAAGAATAAATTGGGTACATTGAAAGGGTGAAATAATACACTTTAAATGAAGAAAGCAATTTCATATGTAGCAACAGAAGGCTTTACTCCACATTTATAGGGAAGCCAGTCGCAATAGCACACACCTTTAATCCCAGAACTGGGGAGGCAGAAGCAGGCAGATCTCAGTAAGTTCAAAGCCAACCTAGCATACATCGCAAATTCAGGTACAAAGTAGGACCCTGTATCAATAAGTAAATCAATAATAAAAGATTTATAGGGATAGGCCTGGATTCAATCCCCAGTACTGAGGAGAAGAAAAGATTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTAGACAGAGGGAGAGAAACTGATAGGCAATGGTAGTGGTTGGATAGGTGACGAATGCATAAATAATAATGGTTGAGTGAATGTGGCTGGCTGGATGATGACTAAGAAGAGAAACTGTTCTGTACATTGAAGAAAATGTGCAAACATTGGCAACTTTACAGTATTTTCTGTCTTAAGAAGAAAAGATTCTAGAAGGCCTTTTCCCCCTGATATTTCTGGTAAATGTGTATTACTTTCTCAAAAAGAAGGAAAAGCAGAGGTGTTGCTTATGGCAATGAAGTTGACCTCACTCCTTGGAAGGCACCCCTTCTCTTTGAAGGACTCCAAGGCCCCCTGAGAAAAGGAGAGTCCTCTCTGTCTCTGCCCAGCTTCTCCCCATCCCCAGCTCCTTCCCAGGCCTTCACATCCTCCTGACTTGACAAGAGACAGGAGAGAACTCAGTGTCCCCATCCTTGTGTATTTTGGAGTAATGCCTCTAGACCATCTCGTCATCTCATTGTGAGTCACAGCCAAATGGCCGCTCACTGATACAGGACTGTACATGCTGAGGACTGAGAGAAATATAATATAAATTTAGCCATTTGTCTTCGGCTCTGGCAGCAGCTTTCAGGTACCATTAAAATTCCATTCTACTTTTTGCTATGATAGCAACCAGAGACCCATTGGCGTAGGATGATGGGCTCTTTTTTTTTTCCCTCCTACCATCAGCTCTTTTTCTGGGGAATGGATTGTGTGTTCGCAGTTCAAGGCAAGGTGTATATTAATCATCCTTTACATTAATATAGTCCTTTAAAGCTTTCAGATGCCACAACATCCATCAGCTCATTTGATTTGATCTTCAAGTCAACCCTTGGAGTTGGGGGAAGGGAGCCAACCAAGAAAGGCTCTAGTGGATGTGCTTACAGATGAAAACCTGAAGCCTAACTCACTTGCTTGCATCCCATGAAAACAGGGTTAACTCAGTCAGGGCTTCTTGGTTGTTAGCAATAGGTACAGATCTAGCTAAACTAAGCAAAACCTAGTTTCCTGTCAGATGAACCAATCAAAGGAAAGGCAAAGACAAGTGGCTCCAGGGTCTCAGTGGAAGAAGCCTGCAGGGTCCTTCAGGATCCCTCCCTCCTCCCACTGGCTTTAAACTTTCATGCTCCTGAGAATATAATCTGATCCTTACTTGAGTAAGGAGAAGCTTGCACCAGCAACTCTCCAGAAAGATGGAGAAGACATTTCCCAAAGAAAGAGGTCTGCTCTGGAGGGAGGGATGGAGATGTCGAAATGAACGAAGTACGGATAGGCACAGGCCTCTAGAGCTCAGCTCTTACATCGTGGAAAGGCTAGTGTGTGCTCACCTGCTCACACCTTCTGGCTCCCTCCACTCTACTCTGCTGGCCATATGGCCATGACGTGTGCATAGCTTCACTTGTCTTTCTCTGCTAACAAACCTCCCAGGCTCACTCATTTCCTCCAAAAGAGCAGGCTCAGCCTCCAAGTGCTTGCCTCCAAATAACCCACAGTCTTTGTACCTCCGTTTCAATTTCCCAGGGTTACTCTAGCTCCTCGGGCCTAATGAGCTGGTAGTTTGTAAAGGAACAGGAATTGTGGGAAGGTGTTTAAGTGACAGATGACCATACCACTTTCAGAATTCACAAATTAAAAAAAAAAAACTAACAGTATCACTGCATGGAAATACAGAACAGAAGGAAGTGAAGGGAATCCCCCAATATCCATGCCCCTCCCTGTAAATGCCAAAGTCCCAAATGCCTTATGTCAATGGCTTAGTATCAGCATGTAAGCTCTGCACATCCTCTGGTATACCATTACACAGTGCTGGGCCTTATGCATTGCTAGGAAAGTGCTTTACTAAGGTATAGTTTATGCCTTATGTCACCACTAGATTAGTTATAATGCCTAAAGTTGTGCAAATAGTTATACTGTGTTGTTTAAGGAATAATGACAAGATATGTTTGGATTTTGATCCCTGGTCGGCTGGATCTGAGGATGTCAGAACCACTGACTTGGAGAGCTGTCGATATGTGCTTGTGTGCTTTAGCCCCACATGGCCCACAAGGGGCATCTGAGGCCAAAGATCCACTTTAGTTCCTATAGCTAATCAGGTCAGCTTGTGAGTTTTTCAATGTTAATTTTTAGAATTCTTTTCAGGCTGGTCACACAAGTCACAGGGATTGGCCAGCCTCTGGAAAGAAGTGTCCTGAGGTCATTCCTCAATCCTGGCTTAGCTGACCCAAGCAAGCAAGCCACTGTGTGATGAGAGGAAAGGCAGCAGGTGGTAGGTGACCATCATGTAGTGTCCATTATAGGGGGATAAAATCCCTTGAATGTTTTTTTAAGTATTATATTAATTCTTAGAGATTTTCATACAATGTATTTTGATCATATTTACCCCCTACTACTTTCTGGAACTCAACCCAGATTTGGAACTCCATCTCCGTATACCCTAAGCATCATGGGTTTTGTTGCTTCTGTCATGGTTGGTTTTTAATAATCACCTCATGTAGGGCTGGGAGTGGACTGGCTTCATCATTTGCAGGTCTTTTGCAAGCAACCACAGCTGCTACAAATTTAAAAATACAACAGTCCTGCCATGTCCTGACACTGTTTTGCTTAGGTCCTCGCCAGCTTCCAGCTATTACAATCTTTACCCCCTTTCCTGTCATGCTCCTGATCCCTGCGGTGGAGTGATATAGATGCCCCACGTGTGACTGAGCGCATCACAGTCACTGACTGGTCTTGAATTTCTACATTAACCCTCATCCGCTGCACAAAGCAGCTTCTCTGAGGAGGTTGAAGAGCTTCACTCACCCGTGGGCAGAGAGACGTGAATTTAGAAGGTAGTTTGATAGTACAGCCATGTTAAATTAATTAATAAAAATAGGGGCCTACTACCCCTGGGGCTTTTGAGCTCCCCACCCAAAAGAATCTGATTCATATAACCTGAGTAAAGAGAAGCATACACCCAGAAAGATGGGTAAGACATTTCCCAAAGAAGAAAGAGGTCTGCTCTGGAGGGAGGGATGGAGATCTCAAAGTTAGCAAAGCCGGATTTACCATACGAGGCCAGTGTTTCCATGGAGTCCCTTCTTAGCTCTGTGTTTTCTGTCATGGAACAG
Seq C2 exon
GTCAAAGCCTTTCTGGAAGAAATACTGGATCGGGTGACAGATGAATTTAACATCCCAGAGCTAATGGCTAAGGTGGAGGAACGCACCCCCTACATTGTAGTTGCCCTCCAGGAGTGTGAACGCATGAACATCCTGACCAGAGAGATCCAGCGCTCGCTAAGAGAGCTGCATCTTGGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:66
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.8=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]