BtaINT0050307 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30784067-30788679:+
Coord C1 exon
chr4:30784067-30784309
Coord A exon
chr4:30784310-30788496
Coord C2 exon
chr4:30788497-30788679
Length
4187 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
GTGTTTGTTAACAATTTAAGGTT
3' ss Score
6.98
Exon sequences
Seq C1 exon
ATTGATGATGAGCTGATGCTGGCACCAGGATTTGCAGCCCCACCCAGCCTGGACTGCTCAGGCTACCACCAGTACATAGAAGAGACGCTTCCTCCAGAGAGCCCAGTGCTGTATGGCCTCCACCCGAACGCTGAAATCGAATTTCTGACGGTCACATCCAACATGCTGTTCAGAACCTTGCTGGAGATGCAGCCCAGGAATGCAGTGAGCAGCGAGGAGCTGGGACAGTCCACAGAAGACAAG
Seq A exon
GTAGCAGGTCGCTTTTTCTTTTCTGTTGGGGTGCATCATACATACACCGATGCACACCAACCCTGAGTGCCCAGCTCAGTGATTTTACCTCTGTGTACACACATAACCACTACCTCCCGCACTCCAGGATGCTTCCCTGGTGGCTCAGCTGGTAAAGAATACGCCTGCAATGCAGGAGACCCTGGTTTGATTCCTGGGTTGGGAAGATCCCCTGGAGAAGGAATAGGCGACCCACTCCAGTATTCTTGGGCTTTCCTGGTAGCTCAGACAATAAAGAACTCACCTGCAGTGAGGGAGACCAGGGTTCAATCCCTGGGTTAGGAAGATCCCCTGGAGCAGGCCAAAGATACCCTCCTTACCTCTGTCACCACAGATTAGCTTTCCCAGCATTTAAACTTCAAATACATGTGCTCAGCATGTACTAGCTGACTCATGGCCACTCCTTTCACTGCTCATTTGTGAGATTCATCCACGTTATTGCATGGACTGATGGTTAATTTTTGTTTAGTATTCTACTATGGTGCTGGTGACAGTTTACTCACTAAGCCATGACCTACTCTTTGCAATCCCATGGACCGTAGCCCACCAGGCTTCTCTGCATGGGATTTCCCAGGTAAGAATACTGGAGTGGGTTTCCATTTCCTTCTCCAGATCTACCCAACCCAGGGATCAAACGCACATCTCCTGCACTGCAGGTGAATTCTTTACCATCTGAGCAAACAAGAAGCCCAGTACTCTACTATGTAAATATATAATGCTTTATTTATTCCTTCCATGGCCAATGGGTATTGGGGTTTTTCCCAGCTTTTTGCTATTATGACTATCACAGCCATGAACACTACTGTATAGTCTTTTGTCTGAAGACAAAGGTAATTCCCAAAAGTATCTTCGCATAATACTCATTCCTTTATACCCAGAGGTAGAACTGTTGGCTCAAGGGAGTAATGTTCAGCTTTAGTAGATACTCCCAAACCTTTTTCCAAAGTAATTGTACTGTAAGTTCCAGTTGTTCCTGCTCCTTGGGGGTCTTCTAAATAATATTTCATTGTGGTTTTAACTTTGCATTCCCTCAGTTAACGAATAATATTGGGCATTTTTCCTATATGTTTATGGCCATTTGGATATACCTTCGTGTGAAGTATTTGTTCCATCTGCTTGTCAAATTCTAATTTGGTTATCAATGTTTATCTTACTGATTCATATGAACTCTGTATTCTAGATATGTGTCATTAAGAATATGTATTGCAAATTTCTTCTCCGTATGTGTGGCTAGTCTTTCAAACAGTATGTTTCTGGCTCTGTCATTTTATGAGTGTTTTTTCACCTTTTCTTGGGAGACCAGCATTATTCTTTTGAAGGTATTTATTGCTGTAGAATAGAAAACGCAATGGCACCCAACTCCAGTACTGTTGCCCAAAAAATCCCATGGATGGAGGAGCCTGGTAGGCCGCAGTCCATGGGGTCACTGGGAATCGGACACGACTGAGTGACTTCACTTTCACTTTCCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCATGGACGGAGAAGCCTGGTGGGCTGCAGTCCATGGGGTCGCACAGAGTTGGACACGACTGAAGTGACTTAGTAGTAGTAGTAGTAGTAGTAATATTGCTGTAGAATAATGGGGATGAGAAATGGACATCAAATAATTTTTTTACCTTTAAAATCTTGTTTCTCATTAATTAAAAACCTGAATTTTTAAAAAATTTTCCCCAGTAAATTAACCTTTTTTCTTTCAAAATTACCAATCAAGGATTCAGTTTGTGGGGACACAGTAATCAGATCTAATTATAGAGAGGTCCCAGGAACTTGCTATATTATTTCTTGAAATTTTTCAGTTATTTCTTGAAATAAGGCCATTCATTGAGACATTTTATAATTTAGATATTTTGAAAAGAGATACATGGAGAAAATTCATCTATTTGGGAAGATCTATAATGTTAACAGGGACTTCCCAGGTGGCCCAGTGGTAAAGAACCCGCCTGCTAATGCAGGAGATGTAAGAGATACAGTTTGATCCCTGGATTGGGAAGGAGAGCAGGGCAACCCACTCCAGTATTCTTGCCTGGAGAATTCCCATCGTCAGAAGAGCTTGGCTGGCTGTAGTCCATTGGGTCACAAAGAGTTGGACATGACTTTCCTGACTTAGCATGCACACCCAGCGTTAATAGAAGAACCAGAGAGCATGTGAGGTCATCATCTAGTTCTGAGAGGGCTTCAATCTTTCCAATAAGGAAGCTGATCATTAAATCAAAAACTGCAGAACGAATAAAGTAAAGCTACCTCAGCATTTCCTACAGACAAACCAGCAGCCATCTCCCAGATACAGTTTTTGTGTATCTAATAGGTGCTATAGAAAGTGCTTTACAAACACGCCGTTTGATCCTCTGAAACTCTGAGTGGTATTGATGTGTGTGCGCTCAGTTGCTGTCATGTCCGACTCTCTGCAGCCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCCATAGCGTTTCCCAGGTAAGAATATTGGAGCGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCTGACCCAGGGATCAAACCTGTGTCTCCTACATTGGCTGGTGGATTCTTTACCACTGAGCCACCTGGGAAGCACTGAGTAGTACTGATACCAGGATCTCTATTTCAGAGATAAACTTCGGTGACTTGCTGTGGTCATACAGCTTAAAAGAGCCACTGAAGGAAACCAGATTCTAGGGGAGTCCCAAAGCCATTCTTGCACCTAACTTCTCAATTGTACTGTTTCATACTCTCTGCCGCTGCTGTAAATGAGCCCAAGATTTCAGGATCTGGTGAATTATCTGCCAGGGCACTAAAGCAGTTTGCAAGCATCACATCAGAGCCCCAGGCCATAATCCAAGAAATCAAGGAGAAGGAGAAGCTGCCTGAGGCTTGAGGACAGGGAGTATCTTCCAGTCTTTTCAGGTGTTTGTTGGTTTTCCCAGGTCTGCAAAACTGCATCATTAGAATAACTATCCACATCAGAGTACTATGTACATATGCACGTCCTCAAGGGAATAAATCCTTCATTTCTTTAGGGCAACAGCTCTAGAAGATAGGAGCTTCCTTCTTGTTGAAAATACTGATCCAAACTGCCTCCCAAATTTTTGGATGTGTCAGCCACAAGGGCAGCGTAGCAGAGTCACCAGAATTAGCTCAAGTTTAAGTGGCCCCTTTGGTTCATTTGACTTTTCAAATAATTTGTTTTTAATTAGCAGATTGCAAAAATGGGCTACCCAAATAGTGAGGTTCTCCATGTTCTGATCAAAGAAATGTAGTTATGAGACTTCTTTTGTTCCCTAAATGCTAACAGTAAGTAAACTACCAATAGTAACACCTCCCTGACTATACTGTGGGTGTTCAAGAGGGGAGGGGGCTGCATTGTTTGAGAGCGACCTGAGGGGGTTGGTGATGGTGCTGAATAGAAATGCAGAGACGGATTGGGGCAATGTAGAAGAAGCAGCTTTTACTGCTTTACCAGGCAAAGGGGCCGCAGCAGGGTGATGCCCTCAAGTCTGTGTGTCCCTCCTGGATGGGTCGAGGAGTCTTACAGTGTTCACAGAGCAGGCCTCAATCAGCTTGTGGACAATTCTTGCATCGGTTGGCATCAAGGTGGAGTTTCAAGCATCATCAACCTTCTGGTTTCAACCAGTCTTGGGTCTGTGTTTTTGTGGTCAGTAGTTGTCTTCTGGAGGGGGCGTCTGCTTCCTATAAAAACAACTTAGGAATATATGTCAGGCGTTTATCCATATCTTTCAGAGAACTGTGAATTCAGTGATTCGGCCATGTGGCAGATTTATAGTCTGAACTGTTACCAGTTCCCCAGTCCAGCAGCTATTATTTGTTCACATTTCCCAACCATTACATTAGCTCTTGAGTCAGTATTTCACTTCAGAAGACAAGGACCTAGAGGCTTGTATGTGGTTTAATTGGCAGTGCCATTCTGCCCACCTCCTGGGAGTTAGTAGTCATCTTTTAAACTCATTAGCAAGCATCTTTGGGAGTTGTAGTATGTATTCTTAGACGTAAAAAGTAAGAGGATATACCATCATCATGATCGAAAATGAAACGGAAAGAAGCTAAATCTTTGTGTTTGTTAACAATTTAAG
Seq C2 exon
GTTAAGCATGTCTTGGATGATATTTTGGAGAAACTTCCAGAAGAGTTCAACATGACAGAGATAATGCAAAAAAAAACAAACAGAAGCCCCTATGCCCTTGTTTGCTTCCAAGAATGTGAGAGGATGAACATTCTCCTTCGGGAAATCCGTGTGTCACTTCAACAACTGGAACTTGGATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:77
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.4=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]