RnoINT0048906 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56063285-56063701:-
Coord C1 exon
chr10:56063571-56063701
Coord A exon
chr10:56063435-56063570
Coord C2 exon
chr10:56063285-56063434
Length
136 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
GCCCTTGTCCTGTGGCCTAGGGG
3' ss Score
7.26
Exon sequences
Seq C1 exon
AGTCTTCTCCGACAGACTGGTTGATACAACAGACATGGAAGCTTTCATAGGCATCTTAAGTGACAAACTTGGTACCTTCTTTGACCTCACATTTCATCATCTCTGTCCCAACAAACGCCCTCCCATCTTTG
Seq A exon
GTAAGCCAGGAGCTGGGGTACCTTTGGGCCTTAGGAGGTTGGGGTTAGAAGATCAGAGCATGGGGCTAATAGCTGTAAGGGCCCCCTACGGAGGGCCAGGCATTGGGGATGCTGATGCCCTTGTCCTGTGGCCTAG
Seq C2 exon
GGGACTTCCTGAAGGAGCCCAAGGTCTATGAAGACTTGGTAGATCTGTCAGTATTGAAGACAGCCATGGAGACAGCACTGAATGAGTATAATCTGTCTCCTTCTGTCGTGCAAATGCAGCTGGTGCTCTTCCGAGAGGCCATTGAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127802=AAA_8=PU(7.7=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTTCTCCGACAGACTGGT
R:
TGCACGACAGAAGGAGACAGA
Band lengths:
243-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]