RnoINT0048928 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56040908-56043355:-
Coord C1 exon
chr10:56043156-56043355
Coord A exon
chr10:56041035-56043155
Coord C2 exon
chr10:56040908-56041034
Length
2121 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
3' ss Seq
CCCCTGTCCTTTTCTCCCAGATA
3' ss Score
10.87
Exon sequences
Seq C1 exon
GCTTACCGTCCATGTGCCCAGAGGGCCTCAGTGCTGTTCTTTGTGCTCAATGACATGGGCCGCATTGACCCCATGTACCAGTTCTCCCTGGACGCCTACATCAGCCTCTTTATCCTCAGCATTGACAAGAGCCATCGCAGCAATAAACTGGAGGACCGCATCGAATACCTGAATGACTACCATACTTACGCTGTCTACAG
Seq A exon
GTCTGGTGGCCACGCAGACAGCAGGGGACGGAGCGGCTGGGGACCGAGCTGCCGGCTGAACCCTCTTTCGTTATTTGTGCATAGTGCTGCCACTCCAGTGGTGTCAAATACAAATTTGGGGTGTGGGGGCTTGGGAAAGAGCTCAGTGGATAAATTCCTTGCTGCTTAAGCATGAAGGCTTGGATCCCATGCACCCACATCCAAAACTGGGGACCAGCTGGGTAGTGCTGCTGCACACCTTTAATCCCAGCACTCGGGAGGCCGAGGTGGGTAGCTCTTTCTGAGTTTAAGACCACCCTGGTCTGCAGAGTGAGTTCCATAACAGCCAAGTCTACACAGAGAAACCCTGTTTCACGCCCCCCCAAAAAAACCCAACAACCAACCAACCAAGGGTGGGTACAGTGCTGTGTGCCTGTACCCCAGGACTGGGGTGGTAAGACAGGGTGCCTGAATCCTTCCAGGCAGCCAGTCTAGCTGAGCTGATGGACTCTAGGTTCAGTGAGCGAGATCCTGCCTCAAAAAAATAAAGTGGGGAGCAATTGAGGGAAGTCAATCACCTTCTGTTTCTCCACATGTACTGTGCATACATGCGCACCCTCCACCACACATGAACACACACAGTAGGTACACACACACATGTACACGGATACCAGTACTGATGCCTGGAGCAAGTACATCAAGTACAGTAACTCCAGGTTGCTCCAGGTTGGGATTCAGGAGGTCTGGGGTAGGATCTGTGATTCTGTGCCTCTAATCAGCTTCCGGAGAGCTGTTGATCCTAGTCTGTTTAATCTTTCATTTAATTTTTTTAAACTTACATTAATTTACCAATTCTTTGTGGTGGGCAGCACACATGGGCTGCAGCACAAGTAGCCACGGCAAGCTTGTGACGATCAGAGGACAGATTACAGGAGTCCATTTTCTCTCTCCAGTTCTGGGCTCCAGGGAGATCAAGTTCAGGCCCCCCAGGCTTGGCCCCTTTAGCTGCTGGGCCACCTTGGCAGCCTGTGAATCACATTTTGAACAGCAGAGTACTTAGCTTCTCTTCCTGGACCCCTCTGCAGACCTCTCAAGTCTAGCTTGTTTTGGGTCAAACGTGTGATCCTCCCTCCTTTACCGGGGTCCTCATCTTTGAATGGCACAGCCACCAACCCATGCCACATCACACCCACATCTTGTCACACCCAAGTCATACCCATCAACCACATCACACCCACGTCCTGTCAGCAACATGAAGTTACTCTTTAATTGACCAGCTCCAGGGAGTTGCTGGTCTCTACTTATGCTTATTTCTGATCCTTTCTCCCTCCCTGTCCCACCCACCAGAGCTGGGCCTCACCATATATTTTCACAGGAATTGCACAGCATTCCCCCTAGTAGGCTACCCTACCTCTGTGTCCCTCCTACTCTGTTCTCCAGTTGTTGGTGTCTGTCAGACTACCAAGCATAAATCTGACCTTGTTGCCCCTGGCTTAAACTCTTTAGTGGTTGTTATATCTTGAGGGAACCCCAAAGCCCTCTATGACCTGGCCTCCACTTGCCACAGTTTCCCACCAGCTGCTTGGGCAGCACTGCCAGCTCTCACCTAGTGCCTTTCCCCCCTGGGCTTTCCTTACACTGAGTCCTCCCTGGAACACTCAGTTCCTTCTGGCATGCCCCTGGATAATCCCCTCACGCCTCAAGACACCTGCTGTGAAGATCAGACACAGCAGGGCACCATGTCTTCCTTTCTTTGGACACCACTTTGAGCTCATGACTGCTTCTGGGTGCCTGTGTCAGAGCACGTGGCCTCCCTGCTGAGCTGTGACTTCCTCAAGGACCTAGACTATAGCTTACTTATCTGTGTCTTCAGGGCTACAGGGTGCCGAGCAAGATAGTGAGAGAATAATCAGTGTTTTGTTTCTTAATGGATCCTAAATACATAGTTATGGTTGAACTCTGGGAAAACTGTCAATCCCTCGAGGCCCCTGAGTCCTTGGTTGCTACCAGGAGGTTCGGAGTAGACACTGGCTACAGTCTTTCTGTGCAAGGCCCTGTGTGACCTTTACACACTGTGTTTATGTTGGGCATCTCACCCCACACCCCTCCACCTCCTCCATCTCCCCTGTCCTTTTCTCCCAG
Seq C2 exon
ATATACCTGCCGAACCCTTTTTGAGCGCCACAAGCTTCTGTTCAGTTTTCACATGTGTGCCAAAATCCTGGAGACGTCTGGGAAGCTCAACATGGACGAGTACAACTTCTTTCTGCGTGGGGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:74
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]