RnoINT0049054 @ rn6
Intron Retention
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:100999143-101002055:-
Coord C1 exon
chr4:101001930-101002055
Coord A exon
chr4:100999308-101001929
Coord C2 exon
chr4:100999143-100999307
Length
2622 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCGA
5' ss Score
2.89
3' ss Seq
TTTCCATTTTTCTTTTACAGCTC
3' ss Score
13.2
Exon sequences
Seq C1 exon
GCCAATCGCTGGATAAGAAACAAAGAAAGCAAGAGTGGGTTAAAGGTCATTAAGCTTACAGACACCAATTTCTTACGAATACTGGAAAATTCCATCCGACTGGGTTTACCTGTCTTACTGGAAGAG
Seq A exon
GTTCGATTATTACTTTGCCCTCTCATGTTAATTCCTAACTGTCAGATGTCTGCAATGCTGTTCAGGTCAAGAGATCGCATCTGCACATGCGAAGGACACCAGTCAAGTCCATTATCAAATGCGTCAAACCGGTTGCTACTTGAGTAGTAAATTCTCAGATGAGCTGAGATCTGTGGGCTGAAAGAATTTTCCACCCCACTATTTTGTGTCTAAGAATCCCTTCTTACCGTGCTGCTCATTCCCAAACCTTGCTGTAGTTCTTAAAGGACCAAAAATTCAAAGCGGTAAAGACAGCAGGAACCCCTGTCTACATACATGTCATACACTAATGATGAAACACGCACTGTTCTGGTAGATGTAATCATTATTTCTACTTGGGCATACGGTCAGATTAAAGGGATCAATAATAAAAATGAACCCTTGTTTTTTAGACAGGTCTCATGTATATAGGCTGGTCTCAAACTTACTATGTAGCCAAAAATTAATTTGAACTCTTAATCCACATCCTTCTACCTCCTAAATGCTGGGATTACAGATATGTGTCACCAAAGCTGGGGTTTGCAGTGCTGTGCTAGGAGTTGGGTCTTTGGGCGCTGGGCAAACACTCTACCAACTGAGTGCATTCACACCCCAGAGGAGTGGCTCACTGAGTTAAGATGTTCTACTGTGAGATTTATCACTCCAAGACTAATGTAGCTTACATCATTCACTCATCCCAAAAACATTTCAGAACAAATTGCAAGAAATATAGACAGGGTCCCCTGCCCTCAAAAGCCCACAGACTCATTGGGAACAAAGATAGTAAAGACGGAAGTGATGGGGAGGAAGAGATCTTTCAAGCAAAAGCTTTAAAGAGCAAGCAGGGTACAGAGATGGCAGTAAGAACAGGGACTCAGTCCCAGTCTAGTTTCGTCCTATTACTAGGGTAACACGCTCTCACAAAAAGCATCTTGGGGATGAAAGATTAAATGTTTGACTTACATTTCCAAGTCACAGTCCATCACTGAGGAAGGCCATGTTGCTTGCTGGCTCCTTCACTGACTCCTACTTAGTTTTGTTAATACAGCCCATAATCACCCACCCAGGGGCGGCTGGGCCCTCAAATATGTGCATAGGCCAGTTGGATCTAGGCAAGCCCTCTGCTGAGGCTCCAACGTCTCAAATGAATCTAGGTCTTCTCAAGTTAACAATAAAAACTAACCAGCACAGATCTTGGAGAGGGTGGGATTTAAGCTGTGATTTCTGTCTCAGCTCGATCCAGGAAGACGGTCTCTTGGGCCACAGGACTCAGGCACCATGAATGTTTATAAGGGAGTAAGGGATAAATAAAAGCATGAGCTGTGACTACGGAAGTCCTATGTTGAAGTATCTCTGATTCAGCACAAAGAATGAACAGAAAGGGCGCTGACCTGTGGTAACTTAGCTGCAGCCCTTTCATGATAACAAGGACCAATAATTAATATGATGTCATCCCATTTGGTTTGTGGTTTGTGGTTTGGTTTGTCACGCTTTGGTTCTCAATATCCTAACTCATTAATCCTCACTTCAACCTTACAATTAGATGGATTGATTATTAACAGATTATTATTCCATTCCTCCAGTGGAGAAACTGAGGCATTAAGAAGTTGAACTATCTGTGCAGTCTTGACTGCTTAGAAAATCCAAAATGATTAACAATACTCCCCATTCAAGCCACACTGAGCACCAGGACCTCATTGCAGCCAAGCTGTGGCCAGCACAGAGAAGGTGCTAGAATGAATCCCATACCCTGCCTTGTGTCATGTTGCAGAAGGACATCTCCAGAAGACTTTAGCACCGTTACATTAGCTTCAACTGTCCTCTCAACTTGTGTTTACCTTGAATCTCAAGAGGTCCCGGGGACTTACCTCATTCACAGCAGAGGACAAAGTTCCTTCCTTAGCGTTGTGCCCCTGTGCAAGAGCAAAACACACTTGGGAGTCGGGCCCCCAGCCAGGAGAGGATACTGCAGCTTTCCTGCTCTCCAGGGCATTGGGTCATTACCATGGTACCCATTCTTAGATCCCCTCTCCATCTGCTACAATGGTTCTGTCGGACCCTTTGCCTACCCAGTAATGACTGTGAAACTGATCTTGTTATCTCAGCTCTTGGTGTGGAGGCCAGGGAGGAGGTGGTTCATGGGGTCGTATATGCATGTGGAGGTCAGAAGTTGACTTCAGGTTTCATCTTCTTTCAATTTCCACCTTGTTTTTGGAAACAGGGTCTCTCACTGAGCCAGGAGCTCACCAATGAAGCATACAGTCTTAAGTGATCTCAAGGCAGAGTATTAACATGGCCACAAGGGCAAGTTCAGTCTTTTTGAGATCAAGAAGGACTTTCAGAAAAATGAGTTGCCACACAGACAGCTGAGGAGTGGGTCACCCAGCAGTCAGATCCCATCACCAACCTTTGCTCTACTGCCTTAGTTCTCGTAGGCAGCATGTGAGATTATTCTAAATTAACACCCTGCCTTTGTGTTAGGAAACACATGATCACGGGGGAAAGTACTTATTCAAAGTAAATTCTGAGGCCCTTAAATGACAAGTTGGTGACATTCGCTTTCAACTCCTTGCTTTTTCGCACCTTTCCATTTTTCTTTTACAG
Seq C2 exon
CTCAGGGAAGTCTTGGATCCAGCCCTGGAGCCCATCCTTCTAAAGCAGACTTTCATGAGTGGCGGAAGACTGCTCATCCGCCTCGGAGATTCAGACATCGATTACGACAAGAGTTTCAGGTTCTACATGACCACCAAAATGCCGAATCCCCACTACCTGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581:ENSRNOT00000020894:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(17.7=100)
A:
NA
C2:
PF127812=AAA_9=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]