RnoINT0049198 @ rn6
Intron Retention
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9429271-9430143:+
Coord C1 exon
chr20:9429271-9429411
Coord A exon
chr20:9429412-9429905
Coord C2 exon
chr20:9429906-9430143
Length
494 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTATCTGAAATCTCTTGCAGTCT
3' ss Score
7.79
Exon sequences
Seq C1 exon
GCATGGCTGAAGAGGCGTACCCAGCAGGAAGCCACTGCCTTCTTGAGTCTGTACGACAAGGTGTTTGAAGACGCGTACACATACATGAAACTCAACCTCATCCCCAAGATGCAGCTCCTGGAGTGTAATTACATCACGCAG
Seq A exon
GTGAGACTCTCGGAGTCTCTCGGAGACTCCGCCGCCTGACGGGCACCTAGGATAGGAAGTTCCTACAGCCTCAGAGGAGGATTTGGGCTCTGAGACGTAAATCCCTAGAGGAGGAGGGATGAATTCACAACCTGGTAGTCTTAACTCTGGAGCCAGAAGCAACAGAGGAGGAGGCCTTTTACTTTTCAGACTGGAAAAGCAGACTCGGCAGCAGGAGGCGGGGTCCCAGCTCAGCGTCATTTCCGTTTCCGTTTCCGTTTCTGTTGTTCACACAGCCGGTCTGAAACCTTCTCTCCTCTAACGCTGGCGACTATAGGGACAGTCATCAGGCGGCGTCTTGAGATATTCCCGTTTTCTTTCCTCTTCCCCTCTCTTGCTCTCGGTTTTCTCCCTTCAAAAAATGTCAACCTGACCGTTTTTTTTTTTTTTTAAAACCGAGACAAAATAAAAAAATAAATAAAATAAAAATGGATCTTATCTGAAATCTCTTGCAG
Seq C2 exon
TCTCTCAATCTCCTGGAAGGTTTAATCCCTTCCAAAGAAGAAGGTGGTGTCTCCTCCGTGGACCATCTCCACAAGCTGTTCGTGTTTGGCCTGATGTGGAGTTTGGGAGCCCTCCTGGAACTGGAGAGCAGAGAAAAACTGGAAGTCTTCCTGCGAGGTCATGAGAGCAAGTTAAACCTGCCGGAAATAGCCAAGGACTCCCACCACACCATGTATGAGTTTTACGTTACCGACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542:ENSRNOT00000000651:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGAGGCGTACCCAGCAG
R:
TACATGGTGTGGTGGGAGTCC
Band lengths:
350-844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]