RnoINT0049210 @ rn6
Intron Retention
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9450521-9452046:+
Coord C1 exon
chr20:9450521-9450685
Coord A exon
chr20:9450686-9451819
Coord C2 exon
chr20:9451820-9452046
Length
1134 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TCTGACCTTGCTCTCCACAGGTT
3' ss Score
11.68
Exon sequences
Seq C1 exon
ATCTCCAATTTATTTGCCCGAGACGAGTTGGATGAAATCACCCAAGGCCTGATATCGGTGATGAAGAGGGAGCTGCCTCGACACCCTCCCACCTTTGACAACTTGTATGAATACTTCATCAGCAGGTCCAGGAGGAATCTGCATGTTGTTCTTTGCTTTTCCCCA
Seq A exon
GTGAGTCTCCCTTCCTTGTGTGGTAGAATCATGCACCTAATAGGTGACCTTCTCGGATGACATACATTGACCAGAAACAAACCTGTATTTCAAGAGACTGAAATGATTCTTTCTTAGCACAATGATCCCTTGGACCCAAATCATATCACCAATGTGACTATTTAAGAATATATGAATTATTCGAGGTTGCTGCATAGTTTACCAGTTCATGAATCACCATGAAGACTTTGGTATTACAATCTTGCCCATCTATACTTATAATACGGACATAACATCTTCTTGATGGGTTTTCGACTTTGACTTTCTCTAGCTCACTGTGCTGGCCAATCTTGCAGACTTTTGCCCCGTGTGGCTACTTAAATATTAATTAGTTGAAATATGTACAAATAAAAAAATCCAGTTTCTAGGTCTTGCTAACCTCATTTCCAGTGTTCACCAGCCATGTGTAGCCAGTGGCTACCGTGCTGGGAAGCACTGCAGGAAAACACACACATGTAGGATATTTCCATCCCAGTGTCTGTGTAGCCCCTTTCCCAATCCTCTTGCCAAGGTTTCTCATTGTGAGCTTGTCACTTTCCTCTTAGCAGGCTGTTCCTAGACCTGAACCCAATACGGCAGCCATTTTCCCCAGGACTGGAACCCAATATGGCAGCCATTTCCCCCAGGACAGGAATCCAATATGGCATCCATTTCCCCCAGGACAGGAATCCAATATGGCAGCCATTTCCCCCAGGACAGGAATCCAATATGGCAGCCATTTCCCCCAGGACAGGAATCCAATATGGCAGCCATTTCCCCCAGGACACGAATCCAATATGGCAGCCATTTCCCCTAGGACAGGAATCCAATATGGCAGCCATTTTCCCTAGGACTGGAACCCAATATGGCAGCCATTTTCCCTAGGACTGGAACCCAATATGGCAGCCATTTTCCCTAGGACTGGAATCCAATATGGCAGCCATTTCCCCAGGACACTAAACACTGCCACAGCTCCGAGAAGGTAGTTTCTTTTCCTTTTCCTTTTTAAAAAGTTTGCAGCATCTCACTGCTGGCCCAGGTAGTGGATACATCCCTCCCTCCAGCTGACCATACTGCCTCCGTGTTCCTCATGTCTTCTGACCTTGCTCTCCACAG
Seq C2 exon
GTTGGTGAGAAGTTCCGGGCACGGTCCCTCAAGTTTCCTGGCTTGATTTCAGGCTGCACCATGGACTGGTTCAGTCGCTGGCCCAAGGAGGCTCTGATCGCCGTGGCCTCATACTTCCTTTCAGATTATAACATTGTCTGCTCCATGGAGATTAAGAGGCACGTTGTGGAAGCCATGGGGCTCTTTCATGACATGGTTTCTGAGAGCTGCGAAAATTATTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542:ENSRNOT00000000651:75
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
NA
C2:
PF127802=AAA_8=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAAATCACCCAAGGCC
R:
CGCAGCTCTCAGAAACCATGT
Band lengths:
348-1482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]