RnoINT0051267 @ rn6
Intron Retention
Gene
ENSRNOG00000056258 | Dsc1
Description
desmocollin 1 [Source:RGD Symbol;Acc:1310768]
Coordinates
chr18:11878597-11879677:-
Coord C1 exon
chr18:11879423-11879677
Coord A exon
chr18:11878643-11879422
Coord C2 exon
chr18:11878597-11878642
Length
780 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TGTGCATTTTTTATGTATAGGAA
3' ss Score
7.77
Exon sequences
Seq C1 exon
GAGGCAAATATTAGACTCCCCACACAGACAGTCAACATCTGTGATACAAGCACATCTGTTGGGACTCTTGGTGGCCAAGGAATCAAAACACAGCAAAATTTTGAGATGGTCAAAGGAGGCTACACCTTGGAGTCCAACAAAGGAGGTGGCCACCATACCTTGGAGTCCAGCAAAGGAGGTGTGCTAGGAGCAGCAGACACTGGCCGATATGCTTACACTGACTGGCAAACTTTCACTCAACCTCGGCTCGGCGAA
Seq A exon
GTAAGTGCTTAAGTCTTTAGGTGCCTACTATGTCCAATCCTAATATGATTTATAAACCAGGGTTTCCCAAAGTACCCCTCACACACCTGGATCACACCTTTTCATCTCCTGTACAGGGACAGACACTGGTGTAAGGGCCATACTCAGAGTTGAATTTAAAATTTTTGATTTGCAAGACTTTAGGACTAATTTATGTGTATGTCTTTGGTATATTAAAAGACTGATATCTTTTTCACTAAATATCATCAGAAAAATACATCTTCAGTGAAGAATTCGCTATAGTATAATGAACAGACCATAAATTTCCACCATTTTGCCAGTATGCTATAGTTCTATATGTAGTTATGAAATCTTGCCTACCTCAATCAACCAAGATAGTTGGGTAGGCTTTAATCTTAGGTTCCATTCTGCATGTTTTTCTTGCTTTTGTTTCAGATTGCTCAGGCTGATATGAGCCAAATGTTAGATAATTACAACTATATAACATGAATATATTATGCATGTTATATATAACATCAATGTATTAGGCCCTCAAAACTATATACGGTATAAATGCAAGAACCACAGCCTACACTGGTTCTCCCCCACATATACAAAGAAGCCATTGAGATACAGTTCAACTAAATACACCTTATATTCCAGTGAGAACTTGTAAGTTATTTATGTGATATATGCATAGCCTTGGTTCTTATAAATGTGGTCACTTTGAGCATTTATGTATTTGCTATATTTTAAGAATGAATATAATATAGACCAATCATGTGCATTTTTTATGTATAG
Seq C2 exon
GAATCCATTAGAGGACACACTCTGATTAAAAATTAAACAGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056258:ENSRNOT00000078207:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAAATATTAGACTCCCCACA
R:
TTTTAATCAGAGTGTGTCCTCTAATG
Band lengths:
286-1066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]