GgaINT0101881 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJD7]
Coordinates
chr2:105634159-105635364:-
Coord C1 exon
chr2:105635131-105635364
Coord A exon
chr2:105634357-105635130
Coord C2 exon
chr2:105634159-105634356
Length
774 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TGTGTTCTCTTCCTATGCAGAAG
3' ss Score
10.2
Exon sequences
Seq C1 exon
GATCACAATATAATTCCTCTACAAACTACTGATCAAGTAGGATCTGGAATAAAAACAGGAGATCAGCAAACATTTGAAATGGTAAAAGGAAGAGGGCATACCTTGGAATCAGTCAGAGGAGGTGGACATCAGACGCTGGGATCAGTCAAAGAAGGAGGAGGGCAGGCTATGGTGGACACGTGTAGATACTCCTACTCAGAATGGCATAATTTCACACATCCTCGTTTAGGAGAA
Seq A exon
GTAAGTATTCCAACACTGGTTTCCTAGCGTGTAGGTTATGATCAGTGTATGTAGTCTTCTCAAGAAAGGCATTTGGGCTAGAAAGGTCTTTGGGTTTTTTTTTTTAGCTTGCTTGTTTTTCTTTTCTTTTGCTAGTCTGCGTCCTGTTTTGGAATATTGCCCTTTCAAAAAGTCATCCTTTTATGTATTTTGAGACATAAGCATAAATGACTCTCTTTTCTTAGCTTAAATTGTAAAAAGTATTTGGTTTTTCAATTAGAATATTTAGCTTCATTGATAATAATTACTTAAACTTTTATGAGTTTATTTTTGTTAATTTCTTTGCTTTTATTCTAACTGCTTGCTTGTGCTAACTTAAACCACAATATTTATCTTAGCAATGGTGTAGGAATGTATGTACAACATTTGAAATGTAGTTACTCCATGCCTTGGGGATCAAAAACTCACTCTCACTACTTGTCTAACTACTTTCGTGTATCGGTTGTTCAGTTTTGAATGGATTTTGGTTGTCTGACTGGTTACTTAAACAGGTTCTTCCTCTTCTATTGTTACATATGTAATTAGTAGAAATGATTTCTTTATTAATATTTATATTTTATAATCTTAATGATATAGACCAATCATGTGCATTTTTTGTATGTAGGAATCCATTAGAGGACACACTCTGATTAAAAATTAATCAATGAAAGGTAAATCAAAAGAAAAATTATTTTTCTGCAATACTTTTAGAATAACAATTTAAGAAAATAAATAATGTGTTCTCTTCCTATGCAG
Seq C2 exon
AAGGTGCATCTATGCAGACAGGATGAAGAACAGAAACATTCTGAAGATTATCTCCTTTCATATAACTATGAAGGAAAAGGATCCTTGGCTGGCTCTGTAGGCTGCTGCAGTGATCAGCATGAAGAAGAGGCACTTGACTTCTTAGATCAACTGGAACCCAAGTTTAGGACATTGGCAGAAACATGTATAAAAAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015140:ENSGALT00000024430:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0104912=Cadherin_C=PU(40.5=57.7)
A:
NA
C2:
PF0104912=Cadherin_C=PD(57.7=97.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGATCAGCAAACATTTGA
R:
TGCCAATGTCCTAAACTTGGGT
Band lengths:
357-1131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]