RnoINT0051298 @ rn6
Intron Retention
Gene
ENSRNOG00000017159 | Dsc3
Description
desmocollin 3 [Source:RGD Symbol;Acc:1311782]
Coordinates
chr18:11755446-11758614:-
Coord C1 exon
chr18:11758360-11758614
Coord A exon
chr18:11755644-11758359
Coord C2 exon
chr18:11755446-11755643
Length
2716 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CTCTTTTTTGGACTTTACAGAAA
3' ss Score
7.99
Exon sequences
Seq C1 exon
TGCTCTGCCAATGGATTCACCACCCACACTGCCAACAACTCCAGCCAAGGCTTCTGTGGCACAATGGGGTCAGGAATGAGGAACGGTGGGCAGGAGACCATCGAGATGATGAAAGGCCACCAGACCTTGGACTCCTGCCGTGTTGCTGGGCATCACCACACCCTGGACTCCTGCAGGGGAGGACACATGGAAACCGACAACTGCAGATACACGTACTCAGAGTGGCACAGCTTCACTCAGCCCCGACTCGGCGAA
Seq A exon
GTGAGTTCTCTTGGGTGTCAGATATTAACGTGCATTCCCAGAAACTGCTTTGCCACGCTGTGTTATGTGTCTTCTCTTGTTAGGCATTTAAAAAAATGCTTTGGTTTTCTCACAGTCTTTAAGTTTTAAATATTTTGATTCCTCTGTCTCATTCATTTGGTTTCTAGATCCTTATGAGATCCAGAGGCTTCTAATATCTGCCCTGAATGGTCATTTTTAGGTGTATGTCTACCATAAAAACTCCATTGATAAGAAAAGAATGTGAAGAACAATTCTAGTTCCTCAGAAACACGCATTTCCCAAGTCAAATTTGTATTTTGCTATGAAAACATAAACCTCTGAGTGCAGCTTTGGGTTGAAGACTGGCGCACTTTACTGAGTACAGCTTCAGTTCAGAGATCTGCACCCTTTACTTAAGCCATGCATTCATTCATTTACTCAGTGTAATTTTCTACTTTGCTTTAAGTGGATGAGTGCACACATTTATAGGGTGTGGTGAGGGATCACCTATGTGTGCAATGTGGAACAGCAAAATGACCCAGTTCACAGGGACATTTGAAATTTATTCTTAGTAATTTTGAAATATAGAGCTCACCATCATGTGGATTGTTTTCAATACGTAAGGCATACTGTGCAGCTGTGCGGGGTCTCATAGAGAGAGAGGCTCATAGAGAGAGAGGCTCATATAGAGAGAGACGCTCGTATATAGAGAGAGGCTCATATAGAGAGAGACGCTCATATAGAGAGAGGCTCATATAGAGAGAGGTGCTCATATAGATAGAGGTTCATATAGAGAGAGGTGCTCATATAGAGAGAGGTTCATATAGAGAGAGGCTCATATAGAGAGAGATACTCATATAGAGAGAGGCTCATATAGAGAGAGGTTCATATAAAGAGAGGCTCATATAGAGAGAGACGCTCATATAGAGAGAGGCTCATATAGAGAGAGGTGCTCATATAGATAGAGGTTCATATAGAGAGAGGTGCTCATATAGAGAGAGGTTCATATAGAGAGAGGCTCATATAGAGAGAGATGCTCATATAGAGAGAGGCTCATATAGAGAGAGGCTCATATAAAGAGAGGCTCATATAAAGAGAGGCTCATATAGAGAGAGGCTCATATAGAGAGGCTTATAGAGAGAGAGACACTCATATAGAGAGAGGCTCATATAGAGAGAGACGCTCATATAGAGAGAGGCTCATATAGAGAGAGGCTCATATAGAGAGAGGCGCTCATATAGAGAGAGGCTCATATAGAGAGAGGCTCATATAGAGAGAGGCTCATATAGAGAGAGGCTCATATAGAGAGAGGCTCATATAGAGAGAGGCTCATATAGAGAGAGGCTCATATAGAGAGAGGCTCATATAGAGAGAGGCATTGCTGTGGAAGAAAGGATTCAGTAAGTGGGTCTCAGTCTAAATCAACAGTGTTGGAAAGCTTTTAAAAATACAAATGCCTTTGTTTCATTCTAGAAGACTCTAATTCCACTGGTGTGTGTGTGTGTGCGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATAAAATCTCATATGTGATTTGTATGTCAGGCAGGGTAAGGTAGGGGTCCTGTTTAAACATTCTTGCTCAATGATTCACGTGTGAATCAGAGGGAACTGATGGATTCTAGCAAATATTCTACCAGACACAGTTAGTTCTGTGAAGGACAGAACATGAGTAATATTCTAGAAGAGGGCTCCAAATCACTGCATGCCCATATTATTAACTTTTTTATTTATATATTGTGACACTCAAGTGTTTACATGTTTTATATTTGAAGATGGCATTCATGTGAGATTATGAGAATTAATTCTGCTCCAGGCCCTCACTTAGGAACGTCCTCCAGTGTCATAACTGGTAATGGGAGGAGAAGCCAGCACAGTCATAGTTATAACAGTTGGTAGCAGCTGGCCATGAGCTGAGGGTTAGGGAAAGTCTGTGCAGGTTAGCATAGGGAACCTTGAAGATTGGAAGACAGGCCAGCAGGACATAGCACTGAGGGTAAGGAAGACAGGGTAAGGCAGAGGCAGCTTCGGAGCATAAGTATAGTTTCAGCATTGTGAGTTAAATGGATGCTTTTAATTTTATTGATTTTGGGGGGTGTATCTCTGGCTTTCGGCCACATTGGAATGCATTTTTATATGTACTTCTTTGCTGCACACACTAGAGGATTAGCTCATGGTCATTGTACCCTTACGAATGGCGGTCATAAACAGTATATTTCCATGCATTGCTCTATCCATCTTTAGTTTCCCAAAATAACAAAGCGATATTGGAGGAGAGGTTGACTTAAAGTAGCACACGCTAGTAAACTAAAGTTACTTCAAACTAGGACCATTTGGTATCCACCTTCAAATTCCAACCACTTGGCATATTGTCTTCATTTTGTGAACTGACCTCAACTATAGACATAACATTTGGGGATATTTAATGATGACTGAAATGTACTTAAATATAACATCTGTAGATCTATTTTTATTCTGATGAATTATTAAAAATGCAAACTATACTGATTTATGATATGGCTGTAATATAGACCAATCATGTGCATTTTTTGTGTGTAGGACTCCTAGAGGACACACTGGTTAAAAAATTAAACATAAAAGGTAAATAAAATAAATTTTCTGTTCATATATTGAAGTTGTTTTAAAAAAATAATACAATCCTCTTTTTTGGACTTTACAG
Seq C2 exon
AAATTGCATGTGTGTAATCAGAACGAAGACCACATCCCATCTCAAGACTATGTCCTCACCTATAACTACGAAGGCAGGGGATCTCCAGCCGGTTCTGTAGGTTGCTGCAGTGAAAAGCAGGAAGAAGAGGGACTCGACTTTTTAAACAATTTGGAGCCCAAATTTCTTACATTGGCAGAAACATGTACAAAGAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017159:ENSRNOT00000064554:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.092
Domain overlap (PFAM):
C1:
PF0104912=Cadherin_C=PU(46.8=68.2)
A:
NA
C2:
PF0104912=Cadherin_C=PD(51.6=97.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]