RnoINT0051310 @ rn6
Intron Retention
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37130348-37132531:-
Coord C1 exon
chr11:37132335-37132531
Coord A exon
chr11:37130445-37132334
Coord C2 exon
chr11:37130348-37130444
Length
1890 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTTTTCTGCTTTGGTTGCAGATT
3' ss Score
10.39
Exon sequences
Seq C1 exon
TTCCTGCCATGATAACCTCTTATCCCAACACCACCCTGGCCACTCAGGGTCAAAGGAAGGAGATGAGCTGCACAGCACACGGGGAGAAGCCCATCATTGTCCGCTGGGAGAAAGAGGACAGGATCATTAACCCTGAAATGGCCCGTTACCTGGTGTCCACCAAGGAGGTGGGAGAGGAAGTGATTTCTACTCTGCAG
Seq A exon
GTAAAACTGCCACCTGTGGCAGAATGGGGCAGGGTGTCCTGGGACAATTAGTCAGGCCTCCCACAGGGCTGTACACATGGCAGTGACGACTTGGTGAATGTCTTGCTAGATTTCCTCCTGACACTCATCCCTCTGCATGGACAAAGTCACTGAATGACCTTCACAAGTAGTTACTTACAGTCACCTTCCACAGAGAAATGATTAAGCATGGAGAGAAGTCTCTCATGACAGTTGTCCTCAGAGGGGGTGAGAGTATGCTCAACCTCCTACAAAACAAACAAACAAACAATAGCAAGAGCTTAGAGACAAAAAGAATACCCTAATAAAAATACTTTTCAAGAACTAGGGAGATAACTCAGCAGTTAAGAGCACATACTGCTTTTCCAGAAGACCTGGATTCAGTTCCTAGCACCCATATTGGGTGGCTCACAACCATCTGTAACTCCAGCCCTAGGGGATCTGATGCCTTCTTCTGGTCTCCATGGGCTCATATACACATGCACACATGCCCCACACATATATATGTAACTGGGAATGAAGTAAGTTTTTTTTTAAAAAAATTGCTTATTTGGAGAAATCCAACATAGAGAATATCCTGTCGTTAATCTAGAATCACAAGCACCTGGAGGAAGCATGTCTAGTCTTTCTCCAGCACTGTGGGTGATTGTCTGAGCAATGCTTTTGTAATATGGAGGGCTGGTGCAGACAAAGGGGAAGCTTGAAGCTCTGTATTTGGAATGCACAGTGGGCTCTGTCTCCGGCACACAATTCTGAAGCCCTATGATATAGAGTACTAGTGTGGTCCCAAGGATGCTGGCTGTACAGTCATGCCTTACCTTCCGTAGACAGCAGATGTGAGAATGATGTAACAATTTCTGTGGACACCATAGATTTTGCACACAATGTATTCCTCACATACTTGAACCCACTCTGTGGTGCTCAAAATAGCAAACCCAGTGTGCAGAGCTGCACTGTCTGTTGAGGAAATTCTGACAAGAAATGGTGTGTTCATAAAAAGTAGTGCTTCATCTGTGGAAACAGAGAGGTAGGTTCAAAGGGCCAATGCACTCATAGATGTTCCTTATGCATAGTTCTTTAAAATCATACCACTTGGAGAAAGAGGGAAGTATATGGAATATATATGGGCCCACCGACAGCAGCTCATGTGAATTACATGTTCAGTCCAGTGAGACAGATCACTCCATTCGCACGCTTACAATTACATGGAAATAGTTTGCTTTCAGAGGGTTTAGATATGTGTGTGCATTTGTGTGCCAGTGCATATCAACATGTGTTGGTCTGTGGGTGAGCACGTTTCTATCAGTATGTTTGTGTGTGAATACATATGTAAGGTTGAGTCTGTGAGTGTGGGCATTGGTGTGTGAGTTTGTATGTACACACATAGGAATGTATACATACATGTGCAGAGGTTTGTGTCTGAGTGACTCCATGAATGTGAATGTATGTGTGTCTTTGTATGTCTCTCTGGGTGTATCCATGGGTGTGAATGGGAAACAATGTGTAGGAGTGTCTCCATGTGTGTTATATGCGACTGGGAATGTTTATGTGTGTATGAATGTGCCTGTGTCCATAAATGTGTTGTGTCTCTGTATGTGTTTGTGTGTAGCAAATTAGTCTGTGTGAATATGGATGTGTCTGTCTCTCTCTGTGTCTATGTATCCATATATATCTGTGTGTGTCCATGTATAAGTGGGAATATTTATGTGTGTCTCTGTCTGTGGCATGTGTGTATCCATATTTGTAAGTAGTAATGGCTGAATGCTGGGGATGGAAGGAAGGGTGAAGAGTTATTGTCCCACCAGAAGCCGTGCCTGCTGATCTCCAGCTTAAGCTATAACTAAAGTGAGCACTTTTCTGCTTTGGTTGCAG
Seq C2 exon
ATTTTGCCAACAGTGAGAGAAGATTCCGGCTTCTTCTCCTGCCATGCTATCAATTCATATGGGGAGGACCGCGGAATAATTCAGCTCACGGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992:ENSRNOT00000002215:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.3=95.5)
A:
NA
C2:
PF0767911=I-set=PD(31.6=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGCCATGATAACCTCTTATCC
R:
CTTGCACCGTGAGCTGAATTA
Band lengths:
294-2184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]