DreINT0060127 @ danRer10
Intron Retention
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6198504-6201342:-
Coord C1 exon
chr15:6201146-6201342
Coord A exon
chr15:6198601-6201145
Coord C2 exon
chr15:6198504-6198600
Length
2545 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTACATTTTTCCCCCACAGATC
3' ss Score
13.23
Exon sequences
Seq C1 exon
TTCCTGCCATGATCACATCTTACCCCAACACCACACGGGCAGAACAGGGTCACATGACTGAGATGAGCTGCACTGCTCACGGTGAAAAGCCCATCAAGGTTCGCTGGGAGAAGGAATCTCATATCATCAACCCAGACATGAGCCGTTATGTGGTTACTGTGAAGGAAGTGGGGGATGAGGTCATATCCACCCTGCAG
Seq A exon
GTGAGCAAAGGCCCCCATCTTAACTGGAAATGCAATCATATGCCTCATTTAAACACACATATTCAGCTTTGCTCTGGACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTACAGTTGAAGTCATAATTATTAGCCCCCCTTTGAACTTATTTTTCGTTTTAAATATTTAACAGAGCAAGGAAATATTTATACATTTTAATACAAGATTCGCTGTGCTGTGAAAAAAATATAAATCAGTGTATGGAAAGCATCGTCAATGCACCGTGATGCACCGAGATATCAAATTGAACCAAATTCGGTTCGAAACCGATTCGAACCGTGAGACCAGTGTAGGCTCACACCTCTGATTAGTATAGTGTTTTTAGCATAGGTAATACTTTAGTATAGTGATCAAACACTGTAATCCCAATAGGTTTAAGACAGGGTTGTCCAAACTCAGTCCTGGAGGGACGATGTCAGGGCCGGAGAAAGCTAAACTGCCGCTCTAGGCAGAGGACGATCACGCCGCCCTCAACCCCAATGTGAAAACGAAAGTGACCGTTTATGAAAATGAAGTGAGGTGTCACGGACCTCCATTCTTCCGCCCTATGCGCGTATATAACTGAGTGAGGACGCGCGGGTGTAGCGGACCTCTATTCTGCCGCCCTATGCACGGATATAACTGAGGACACGCGGGTGCTGATGGAGGTGTCGCTGACGCCGTCCTCTCTATTCTGTCGCCTATTCGCGAATATAACTGAAGACGCGGGTGGTGAGGGAGGTGTCGCGGACATAACTGAGGACGCGGGTGGTAAGGGAGGTGTCACTGATGCCGCCCTCTCTATACTGCCGCCCTAAGGGGCTGCCTAGGTCGCCTCTATGGACGCGCCGGCCCTGGCCGGTGTCCTACATATTTCAGTTCCAACCCCAATCAAACCCACCTGAACCAGCTAATCAAGGTGTATTAGAAACACCCATAAGGTGTATTGAAGGAAGTTGGAGCTAAACTATGCAGGACACTGGCCCTCCAGGACCAAGTTTAAGCACCCCTGGTTTAAGAGATCAACCAATGAATCGAACTTTACTATGCATAACTTGGTTTCAAACCTTGGTTTCTTTCTTCTGTTGAACACAAAAAAAGACATTTTGAGAAAGAAAGCTAAAAACCTGTAACCGTTGACTTCTATAGTAGAAAAAATAAATGCAATAGAAGTTAGTGGTTACAGGTTTCCAACAATAAAAATATCTTCTTGTGTTCAACAGAAGAAAGAAACTCATAAATGGTGGGTACATGATGTCAGAATTCTCATTGTTGGATGAACTATACCTTTAATGCCGAGTTCAGACTGCATGATTTTCAAAGTAGTCATGTCACAGTTGTTTAAACACTGCATGACTATCTGGGCTAGCGTTTTGTCACTGCTTTGTTTACACTGCCTGATCAACAGGGGGCTTTACACTGTATGACTTTAAAATAGGAAGAATCGCCGACAACTTTGTCTAAACTACCTCTCACAATCAAAAACATGTCGTACATATTTTGTAATTGAATATAACGAGAAAGGAGCCTTTAATGTACAAATTTGCTCACCTAGGTTTGAAGGGAATTAGTAATTTCTGCTCAACCTTTTTTTTTTCGAACTTTTTTTTTGTGGTTTTGCTCAGATAACACGTCAAACAGACACTGATGCTGCTGCCAAATTTCCACTAGTTTTTCCTCCATTTCTTGGGTCCAAATAAACTGACAATGAGTGATTTTAACTTCTCACCAACCTCCCGCTGGCCTGCAGGTCACCACACTACTAGATGCTCCTCTCTCATGGGCTGCAGGTGCTCGCAGATGTTATTTTCAGTCAATGATTTGAATCGCCTAGAGCTCCAGATATTTAGCATGCCAAATATTTCACGAGTGTCGGCGACTCATCGGCGATTCTCTCAGATCGCGTCTTTGATAGTTCATACTGTGTGATTGTCGCTCACTTGCATGAGCAACGGCATGCCTGTGATTTCAGCCATTTGTCGATGATTTGTTAAAACCTGTCGGCGTGTCAAAATCGGGGTTAAAATCATGCAGTCTGAACTCGGCATAAGGGAACTTAAACTAAACCTTTTGAGGAAACCAATTAAGTTGAAAACTAATATTTATGAGTACCGTGAACTTACTCCATTTAAGTACAAAAAATCTTAAATAAATCCGCAATTCCAGTTAACTGACTAATGAAACTTACCAAAACGTATTCATTTGAGTATTGGAATCTCAGTTGAAAGGTTTGTATTATATTGCATCAAACCACTTAAGGTATGTTTTTTGTATAACTCGTATCTTTTATTTTCAAATCATTTACCAGTTTTGCCTCAGTGAACTTCTATGTTTACTTCTTTTGATTGTTATTAAGTAGATTTGTCAGATTTGAACAGCAAAACTCTTAGTACAGTAGCGATATCTCTTTCAGCATTCAGTAAAGTGCATTAATAGTCATTATTACATTGTGTTTACATTTTTCCCCCACAG
Seq C2 exon
ATCTTACACACTGTCAGAGAGGATTCTGGCTTTTTCTCTTGCATCGCCATTAACTCTTATGGTGAAGATAAAGGAATCATTCAGCTCATAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118:ENSDART00000148350:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.3=95.5)
A:
NA
C2:
PF0767911=I-set=PD(31.6=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]