MmuINT0053379 @ mm9
Intron Retention
Gene
ENSMUSG00000032087 | Dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:MGI Symbol;Acc:MGI:2150309]
Coordinates
chr9:45509892-45510503:+
Coord C1 exon
chr9:45509892-45510091
Coord A exon
chr9:45510092-45510406
Coord C2 exon
chr9:45510407-45510503
Length
315 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCCTGCTGGTCACATCTTAGCTC
3' ss Score
3.48
Exon sequences
Seq C1 exon
TCCCAGCAATGATCACATCTCACCCCAACACCACGATCGCCATCAAGGGCCACCCCAAGGAGCTGAACTGCACTGCGCGTGGCGAGCGGCCCATCATAATCCGCTGGGAGAAGGGGGACACAGTCATTGATCCCGACCGTGTCATGCGCTATGCCATTGCTACCAAGGACAATGGCGATGAAGTGGTCTCCACGCTTAAG
Seq A exon
GTGAGTTTCCAGTCCCAATAAGCTTGGGGCACCTTCCATCCCTACCATTCCCACACCCAGATGTTTCTGCATCAGAACCTCAACCTGTCTCCTTTCTGAAAACCATCATTACATGAGTTCCCAGTCTCCTCCGTGACCCTCTCTCCCTGCTTGAGTTCTCTGCATGCACATCTCAATCCTTCGACAGAGAAAAGCCTTAGATAGGACCCTTTAGAATCTCCCTCCCAATCCCCCTAGAATGTCCCCCTCGAATGCCCCCCTCTAAAATACTCTCCCTGTTTCCTCCCTTTCCTGTTCCTGCTGGTCACATCTTAG
Seq C2 exon
CTCAAGCCAGCTGACCGTGGGGACTCCGTGTTCTTCAGCTGCCATGCTATCAACTCATATGGAGAGGACCGAGGTTTGATCCAGCTCACTGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032087-Dscaml1:NM_001081270:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.7=95.5)
A:
NA
C2:
PF0767911=I-set=PD(31.2=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGCAATGATCACATCTCAC
R:
CTTGCACAGTGAGCTGGATCA
Band lengths:
297-612
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: