HsaINT0052349 @ hg38
Intron Retention
Gene
ENSG00000177103 | DSCAML1
Description
DS cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr11:117481174-117482162:-
Coord C1 exon
chr11:117481963-117482162
Coord A exon
chr11:117481271-117481962
Coord C2 exon
chr11:117481174-117481270
Length
692 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCTGCTGGTGGTCTCCCAGCTC
3' ss Score
6.09
Exon sequences
Seq C1 exon
TCCCGGCCATGATCACTTCCCACCCCAACACCACCATCGCCATCAAGGGCCATGCGAAGGAGCTAAACTGCACGGCACGGGGTGAGCGGCCCATCATCATCCGCTGGGAGAAGGGGGACACAGTCATCGACCCTGACCGCGTCATGCGGTATGCCATCGCCACCAAGGACAACGGCGACGAGGTCGTCTCCACACTGAAG
Seq A exon
GTGAGCACCCCCACCTCAGTGCTGGGGGACCCCAACTCTCAGAGAGTGGGGAGCCCGCAGCTATCACATCTGCATCCAGGAGGCAAATGGGGAGCCTGGGAGCCCCTCCCCACACCCCAAAAATGTACCTCCCCTTTCCCACCTATTTCCCCTCTCCATCCAGGAATCTGTGTCTCAGAACTTCACTGTATCTCCTTTCTGACAACCCCACAGCAATCAAATGTGGTTTCTTCAGTCCCACCTTCTTTTCTGGAACCCCCAGGGCTCCATTCTCCCTTTTGGGACCCCTCAGCCCCTCCCTCTCTCCTGGATCCCTCAGCCCTTCCCACTCTCCTGGACTCCCCCCTCAGCCCCTCCCACTCTCCTGGACCCCCCCCTCAGCCCCTCCTACTCCCCTGGGACCCCCTCAGCCCCTCCCACTCCCCTGGGACCCCCTCAGCCCCTCCCACTCCCCTAGGACTCCTCAGCCCCTCTCTCCCTCTGGTGTCCCCCAGCCCCTCCCTGTATGAAGCCCTCCATACTTCCATCTTTGGAAGTCCCTGGGAAGAGAAGCCCTTGACAAAGCCCCTGTGGGTCCCCCTCCCAGAACAAGAGGGCCTTGCTGAGAGCCCTGGAGTGACCCCTTCAGCTGACCAGCTCTAAAAGACTCTCCCTGTTTACTCCCTCTCCTGCCCCTGCTGGTGGTCTCCCAG
Seq C2 exon
CTCAAGCCCGCTGACCGTGGGGACTCTGTGTTCTTCAGCTGCCATGCCATCAACTCGTATGGGGAGGACCGGGGCTTGATCCAACTCACTGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177103:ENST00000321322:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.7=95.5)
A:
NA
C2:
PF0767911=I-set=PD(31.2=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGGCCATGATCACTTCC
R:
GCACAGTGAGTTGGATCAAGC
Band lengths:
294-986
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development