DreINT0060131 @ danRer10
Intron Retention
Gene
ENSDARG00000098057 | dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:ZFIN;Acc:ZDB-GENE-110601-1]
Coordinates
chr15:12173180-12174355:-
Coord C1 exon
chr15:12174242-12174355
Coord A exon
chr15:12173270-12174241
Coord C2 exon
chr15:12173180-12173269
Length
972 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACA
5' ss Score
3.85
3' ss Seq
ACTTTGACAATTTTCTGCAGCTG
3' ss Score
6.81
Exon sequences
Seq C1 exon
TTCCAGCTATGATCACATCGCATCCTAACACCACCATGGCCATAAAGGGACAGAACAAGGAGTTAAACTGCACTGCCCGGGGTGAATACCCTATCATCATCCGCTGGGAGCGAG
Seq A exon
GTGACACCGTTATTGACCCTGACCGCAACCCTCGCTACTCCATCACCACCAGCCCCAATGAGAAGAGCGATGAAGTTATCTCCACACTAAAAGTGAGACATATGCACGCACACAGACATCCATAAACAAACATTTTCAGTAACCAATAAGTACCATCTATTCTGGTGGCAGAGACATGTCTAAAGGTTTCCAAACAAGTTTCCTAATGTTTATTTATTTATATTTCATCACATTTGAGCAACCTCATGCATGTACTTCTTTATAAGAAAACTTGCAGTTTTGCGCTACGTTGTCGATTTTAATCCCTCCCCAAAAATAATTTTAAACACGGAAGTTGAAATTAGCTGACAAAAGCTCAAAAATATCCAGTTTTTACCACAATTAAAGCTAACAGGTGCTAACATTGTCTTAACTGATGCTCAACACACACAAATCTCTTAAAATCTCAAAATAAGTACTCGTGAGTTTTCGTGAACCTTCAAAGGCTTATTTAGGCTAATTATACAAGCTTGGGTAACTATGCAAGTCATTGTAAAACAATAGTTTGTTCTGCAGACAATCAAATATAAATATTTTTAAGGGGGCTAATAATATTGACACTAAAATGGTTTTAAAAAAAATTAAAACTGCTTTTATTCTAGCCAAAATAAGACTTTCTCCAGAGGAAACAATATTCTAGGAAATACTGTGAAAAAAATTCCTTGTTGGTAAACATCATTTGGGAAATAATTGAAAAAGAAACCAAAAAATTCACTGGAGGGCTAATAATTTTAGCTTTAACTGTATACGGTACCATTTATAATTAAATAAAAACTATTTAAATGAGTGATTTAATGTAATTACTGTAATCAAAATAGATCAGGAAGTACAAAGAACCAACCATCCTACTATTGACCTCTATACATCATACAGCAACAAATAAAGTAGGGCCTAGGATTAAAATCTTTTAAACACTTTGACAATTTTCTGCAG
Seq C2 exon
CTGAAGCCAGCAGAGCGTGGGGATTCTGTCTTTTTCTCCTGCCACGCCATCAACTCATACGGCGAGGGTCGAGGGCTCATCCAGCTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098057:ENSDART00000165159:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=0.290
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCTATGATCACATCGCA
R:
CTGGATGAGCCCTCGACCC
Band lengths:
198-1170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]