GgaINT0138366 @ galGal4
Intron Retention
Gene
ENSGALG00000007314 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr24:5325374-5326168:-
Coord C1 exon
chr24:5325969-5326168
Coord A exon
chr24:5325471-5325968
Coord C2 exon
chr24:5325374-5325470
Length
498 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGTCCCCAAAATACCCACAGCTG
3' ss Score
6.3
Exon sequences
Seq C1 exon
TCCCCGCCATGATCACCTCGCACCCCAACACCACCATCGCCATCAAGGGGCAGAGCAAGGAGCTGAACTGCACGGCGCGGGGCGAGCGGCCCATCATCATCCGCTGGGAGAAGGGTGACACCGTCATCGACCCCGACCGCAACATGCGCTACGCCATCGCCACCAAGGACAACGGCGACGAGGTCATCTCCACCCTCAAG
Seq A exon
GTGAGGGCAGGGTCCTGGATGTCCCTGGGTTCCAGGATGCCTGGGCATCCTCTGCCAGCATGGGGCCATTTTTGTGCTGCAGATAGTGGGGCGGTGAACATGCAGCTGCTGCATTCAGCTTCTTTGAAAGAGCTGCAGCACGACCGCTGCCTGCTTGCTGTGGTGGCCCCAAAAGGGGAACCCAATGAGTTGGGTTGTCCTTGCACCAAATTTTGCTTTGCTGTGCAATGGGCCCTTGTTCAAAAGCTGCATTGCAGCACCAGGGATGCCTCAAGGTGTGAAATCTCCATGCACATGTCTGAGCAGGCGGTCATAGAATCACGGAATGGTTGGGTTGGAGGGGACCTCAAAGACCATCCAGTTCCAACCCACCACATCAGGCAGTAGATGGGGATGGGGCCAGGGGGCAGGCTGTGTTTGCAGGCTGTAGGAAGAAGCTTGGTGCTTGGGGTGCCTAAATCTGAAGGGGCTGCTTTTATGTCCCCAAAATACCCACAG
Seq C2 exon
CTGAAACCCGCTGACCGTGGCGACTCAGTCTTCTTCTCCTGCCATGCCATCAATTCGTACGGCGAGGACAGGGGCCTGATCCAGCTCACTGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007314:ENSGALT00000011835:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.7=95.5)
A:
NA
C2:
PF0767911=I-set=PD(31.2=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCGCCATGATCACCTC
R:
TTGCACAGTGAGCTGGATCAG
Band lengths:
296-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]