HsaINT0052349 @ hg19
Intron Retention
Gene
ENSG00000177103 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:14656]
Coordinates
chr11:117351889-117352877:-
Coord C1 exon
chr11:117352678-117352877
Coord A exon
chr11:117351986-117352677
Coord C2 exon
chr11:117351889-117351985
Length
692 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCTGCTGGTGGTCTCCCAGCTC
3' ss Score
6.09
Exon sequences
Seq C1 exon
TCCCGGCCATGATCACTTCCCACCCCAACACCACCATCGCCATCAAGGGCCATGCGAAGGAGCTAAACTGCACGGCACGGGGTGAGCGGCCCATCATCATCCGCTGGGAGAAGGGGGACACAGTCATCGACCCTGACCGCGTCATGCGGTATGCCATCGCCACCAAGGACAACGGCGACGAGGTCGTCTCCACACTGAAG
Seq A exon
GTGAGCACCCCCACCTCAGTGCTGGGGGACCCCAACTCTCAGAGAGTGGGGAGCCCGCAGCTATCACATCTGCATCCAGGAGGCAAATGGGGAGCCTGGGAGCCCCTCCCCACACCCCAAAAATGTACCTCCCCTTTCCCACCTATTTCCCCTCTCCATCCAGGAATCTGTGTCTCAGAACTTCACTGTATCTCCTTTCTGACAACCCCACAGCAATCAAATGTGGTTTCTTCAGTCCCACCTTCTTTTCTGGAACCCCCAGGGCTCCATTCTCCCTTTTGGGACCCCTCAGCCCCTCCCTCTCTCCTGGATCCCTCAGCCCTTCCCACTCTCCTGGACTCCCCCCTCAGCCCCTCCCACTCTCCTGGACCCCCCCCTCAGCCCCTCCTACTCCCCTGGGACCCCCTCAGCCCCTCCCACTCCCCTGGGACCCCCTCAGCCCCTCCCACTCCCCTAGGACTCCTCAGCCCCTCTCTCCCTCTGGTGTCCCCCAGCCCCTCCCTGTATGAAGCCCTCCATACTTCCATCTTTGGAAGTCCCTGGGAAGAGAAGCCCTTGACAAAGCCCCTGTGGGTCCCCCTCCCAGAACAAGAGGGCCTTGCTGAGAGCCCTGGAGTGACCCCTTCAGCTGACCAGCTCTAAAAGACTCTCCCTGTTTACTCCCTCTCCTGCCCCTGCTGGTGGTCTCCCAG
Seq C2 exon
CTCAAGCCCGCTGACCGTGGGGACTCTGTGTTCTTCAGCTGCCATGCCATCAACTCGTATGGGGAGGACCGGGGCTTGATCCAACTCACTGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177103-DSCAML1:NM_020693:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.7=95.5)
A:
NA
C2:
PF0767911=I-set=PD(31.2=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGGCCATGATCACTTCC
R:
GCACAGTGAGTTGGATCAAGC
Band lengths:
294-986
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)