BtaINT0052870 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016692 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr15:28574447-28575297:-
Coord C1 exon
chr15:28575098-28575297
Coord A exon
chr15:28574544-28575097
Coord C2 exon
chr15:28574447-28574543
Length
554 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CCCCTCGGACTGCCTCCCAGCTC
3' ss Score
5.32
Exon sequences
Seq C1 exon
TCCCAGCCATGATCACCTCCCACCCCAACACCACCATCGCCATCAAGGGCCACGCCAAGGAGCTCAACTGCACAGCACGAGGCGAGCGACCCATCATTATACGCTGGGAGAAAGGGGACACGGTCATCGACCCCGACCGCGTCATGCGGTATGCCATCGCCACCAAGGACAACGGCGATGAGGTTGTCTCCACGCTGAAG
Seq A exon
GTAAGCACCCATGCCCGTCTCAGGGGGAACCCGACTCTCAGAAAGTGGGGAGCCCACAGCTATTGCATCTGAATCCAAAAGAAGTAAACAGGAGTCTGGGAGCCCCACCCCGAAAAATACCTCTCCTTTCCTACCTATTTCCCTCCTTCACCCACCAACCTATGCCTTGAGCCTCATTCTCTCTCCTTTCTGACAACTCTACACTTTAAATGTATGGGATCCTCAGCCACGCCCTCCCTCTCCCCTCCCTCCTGGACCCCTCAGATCCTCCCTCCATCCTGGGACCCCCTCAGCGCCCCCTCTCTCGTGGATCCCCAGCCCCTCCCTCCCTCCTAAAACCCCTTGACCTTTCCCTGCACAGACTCTTCCACACTTCCATCCATTGAACTTTCTGGGAAGAGGAACTCTTGACAAACCCTGGGTGGGTTCCCTCCGAGAAGAAGGTAGTCTTGCTGATCCCCAACTAGATGGGCCCCCTTCAGCAGATGGGCTCTAAAAGACTCTCCCCATTCCTTCCTCTCTCCGCACCCTCTGCCCCTCGGACTGCCTCCCAG
Seq C2 exon
CTCAAGCCCGCTGACCGTGGGGACTCTGTGTTCTTCAGCTGCCATGCCATCAACTCATATGGGGAGGACCGGGGCCTGATCCAGCTCACGGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016692:ENSBTAT00000030167:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.7=95.5)
A:
NA
C2:
PF0767911=I-set=PD(31.2=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGCCATGATCACCTCC
R:
TGTACCGTGAGCTGGATCAGG
Band lengths:
295-849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development