RnoINT0051339 @ rn6
Intron Retention
Gene
ENSRNOG00000016502 | Dscaml1
Description
DS cell adhesion molecule-like 1 [Source:RGD Symbol;Acc:1304887]
Coordinates
chr8:50008309-50008954:+
Coord C1 exon
chr8:50008309-50008508
Coord A exon
chr8:50008509-50008857
Coord C2 exon
chr8:50008858-50008954
Length
349 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCCTACTGGTCATGTCTCAGCTC
3' ss Score
4.49
Exon sequences
Seq C1 exon
TCCCAGCCATGATCACGTCGCACCCCAACACCACTATCGCCATCAAGGGCCACGCCAAGGAGCTGAACTGCACTGCGCGTGGCGAGCGGCCCATCATAATCCGCTGGGAGAAGGGGGACACCGTCATTGATCCCGACCGTGTCATGCGGTATGCCATTGCTACCAAGGACAATGGCGATGAGGTGGTCTCCACGCTTAAG
Seq A exon
GTGGGTGCCCAGTCCCAAGCCTAGGGACACCGTCCATCTCTATCCAAGGGAGGCAAATGGGAGGCCGGAAGCCCTTCCCTGCCCCTTCTAAGGTACCTACCATTCCCACCCAAAAATTTCTGCACCAGAACCTCAAGTCTTCTTTCTGACAACCACAGCAATCTTTATGTGGGTTCCCAGTCTCTTTCATGACCCTCCTCCCTGCTTGAGTCCTCAGGGCACACATCCTTCTGCAAGGGGATGTCTTAGCTAGAACCCCTCTGAACCTCCCTCCCAGTCCCCCTAAATGCCCCCCTCTAAAATACCCTCCTGTCTCCTCCCTTTCCTCTTCCTACTGGTCATGTCTCAG
Seq C2 exon
CTCAAGCCAGCCGACCGTGGGGACTCCGTGTTCTTCAGCTGCCATGCTATCAACTCATACGGAGAGGACCGGGGTTTGATCCAGCTCACTGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016502:ENSRNOT00000022476:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.7=95.5)
A:
NA
C2:
PF0767911=I-set=PD(31.2=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCATGATCACGTCGCAC
R:
CTTGCACAGTGAGCTGGATCA
Band lengths:
294-643
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]