RnoINT0051321 @ rn6
Intron Retention
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37062187-37064232:-
Coord C1 exon
chr11:37064115-37064232
Coord A exon
chr11:37062351-37064114
Coord C2 exon
chr11:37062187-37062350
Length
1764 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACC
5' ss Score
6.66
3' ss Seq
TTTTTCTTCCTGTGAGGCAGTAA
3' ss Score
0.5
Exon sequences
Seq C1 exon
CTCCTGCACGGATCCTCACGTTCAGTGGGACAGTGACTACTCCGTGGATGAAGGACATCGTCTTGCCGTGTAAAGCTGTTGGAGACCCATCACCTGCCGTAAAATGGATGAAGGATAG
Seq A exon
GTAACCAGCAACCCAATGTGTGCCTCTTAGCGAACCCTTAGCCAACATGTCAAGCAGCCTTGTGTTTCTTGTAGACCATGCTAGACCCAAACTCATGGTATAATTAAGGATGACCTTAAATTTCTGTCCCCCTACCTCCATTTTCCTTTTGTTGAGGTAACAGGCGTATGCCATCAAGCCTGGCACTCCACGTGGGCCAGGCAAACACTCTACCAATCGAGCTACTTTCCAACACCTACTTCACGAATGATAATGGAACTGAAGAAACCCTAGTGCTCTGCTGAAACAAGGCAGAAAGGGCAGCCCATACCTACCTTTGAGCATTCCAACTGTATCACGAGAAATTGCCTCAAAGCATGTGGTTTTGATCAACCATATGTACCAGTCTCCTATCAATCCAGACCCTGACATAGGGAAACACTTGTAAGGAAAGGAGCGAGCCCATCAAAGCATCACTGTGGGTGTTCGCTCTACAGTACAGGCGAATGGAGACTAGGAACCCAAGTTACCAGGAGGTTTCCTAGTCCTCTCTACTTTTGAGATAATGGACAATCTAACCCAAGGCACGAGCCCCAGGAACTCATTTAAGCAATGGAATTCAGGGATTGCAAAGATAGCTCAGTGCTGACCTTGCAAGGGACCTGAGGTACTGTCCAGTGCCTCATAACTGCCTGTAACTCCAGCTCCACAGGGATCCAAAGCCTTTTGCCCCCATGTACACCCCACACACACACAGAACTAAAGTCAAGTGAGAGAACACAGTTCCAAGTAGATCCAGCATGGGAGAGGCTAGAGCGGAAATACTGCCAGTTTTGAGGTCAGCCTCCTGGGCTACATAGCAAGACCCTGTCTAGAGATAAAGAAATGAAACGCATTAGGACTTGCCCTGTGGAAAATCTGGTTCTCCGTGTTCAGTAGGGATTACTATAATAATAAATCCAAGAGAGAATGGAGAGAGGGCATGATGAGTCCTGTCCACGTGCTTTATCATGCTTTATCTCTATGCAGAGGAAGAAATTAAGATATAAATAGAGGCCGAACATCCACTAATAGGCATGGAGATTTAAAATAACGGTGCCTATTTCCAAACAAAAGCACTCACAAGCATAAATGATTGAAATAATGGGTTGGACCCAGTGAGCAATTTTCTCATTGCATTTTAAGTTGGTTAATCCAAAGCAAATTCATAAGCTCCCTGGGTCAGGCTGGCACTCTGCCTTACCTAGAAGGGACTCCAGAGGTCATGACGACAGCCGCCTCTTCGCAGGAGGGTCAGCTCTGTGCTCCCTCGAGATGCCATCTTGTCCAGTACATGTCAAGCTCATTAAGAGTCATGGTTTTTAAATTGATTTCAAGTCTACAAGCGATCACAAAATCTAGTTTGATGTGCACGATTTTGTCAATCTGGCCCCTCTGCCATCAAGAGTTTCTCACAGTTGCCACAGGGAGGAAATCTCGGGAGCCAGAGTGGGGGAGGGAAGAGAGAGACATGTTAGATTTGACAATCGTCACTGGGTTTTGGCCACTAATGGAACTAGATACTTAGCCATTGACACAGATCTACTCCCGCATGATAATTTTTCTTTTAATCTCTGCCAGTCAGTAGTCTGGTCACATAATCACAGCACAGTTATTTTATAATGCAAAAATAATTAAGGTTGCAATTTACCGTTTGCTCCAGAGAAAGGCTTGATACTTCTTGCTGACCTCAGCTAATGTGGTTGTAATTTCTCTAATCTGTGCATTTTTCTTCCTGTGAGGCAG
Seq C2 exon
TAACGGGACGCCCAGCCTGGTGACGATTGATGGCCGCAGAAGCATCTTCAGCAATGGGAGTTTCGTTATTCGCACGGTGAAGGCCGAGGACTCTGGCTACTACAGCTGTGTTGCCAATAACAACTGGGGATCAGATGAGATCATATTAAATTTGCAAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992:ENSRNOT00000002215:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(40.0=90.0)
A:
NA
C2:
PF0767911=I-set=PD(58.9=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCACGGATCCTCACG
R:
ATGATCTCATCTGATCCCCAGT
Band lengths:
262-2026
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]