RnoINT0051385 @ rn6
Intron Retention
Gene
ENSRNOG00000016853 | Dsg1
Description
desmoglein 1 [Source:RGD Symbol;Acc:1309925]
Coordinates
chr18:12030825-12033016:+
Coord C1 exon
chr18:12030825-12030896
Coord A exon
chr18:12030897-12032888
Coord C2 exon
chr18:12032889-12033016
Length
1992 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTTACCTCTCTCTCCTTCAGTGG
3' ss Score
11.01
Exon sequences
Seq C1 exon
CCGACGAAGACAACGTTCACCTTGGTCCTGCCGGCATCGGTCTGCTCATCATGGGGTTCCTAGTCTTAGGAT
Seq A exon
GTAAGTATTCCAGTATTTCTTTTGACATGCGTCTCCCAAAAAATACAGCAAAAGAAATCAAACCGTTTAGGTGTTCAACTTAACAGTGTATGTCTTGCAAGGATTACCTAACCGGTTGTTCTGAGTTTTGCTCTTGGTCTTGCTTACTTCACAACACCACTAGGGGAGGAAAGGCCCCACGAGTGAAGGCTATGCTACATCTGGGGCCACTACAGTAGCCTTAGTCGTGGACAGAAACAGAAATATAGAGTCCAGTGGATGTTCCTGGTGGAATTTAATATTGCCCTAAATTATGACAGAAACTGGAATGGAATGGGGGGGTAATATCTTGAAGCCTACACACTGTCGTTAAGTTAATATAAACATTGACAGTTGCAGCTGAGCGTGGTGGCACACACCTATCATCCAAGCAGTTGGGCGGTTGCCGTTTTCAAATATAGAATCATAAAGTATTGGTGGTAAAGCAAGCTTCACATAATTAAAATAATTAACCACAAAATGTACATTGAAAGAACTCACACAAAATTTTAAAATATTTTTCTACCTTCATTTCTTTCTGTTTAAATATATTTATTTTTATTTTATGTGTATACGTTTTTTTTGCCTACATAAATGTAAACAAAAGCACGTGGGCCTGGCCCACGAATTCCTTGGAACTGTAGCTATGGATGGCTGAGAGCCACTTTGCAGATGCTGGGAACAGTCTCTTCACCCCTGAGACCGTGCTTAGCCACCTGGCCAGCCCCTCCTCGTCCGTCTTAATGAGTGACTGACTACTTCTTCGCTAGGTTTTCTCTGACTTTAAGGAACTCACCTCTGGGAACATTTCCTCAACACAGATCCATGTAAACCACAAAGAAATTTGGGCACAGGGAGAACACAGTTTAAAATGGAGCACTTTCTCTAGAATTTGAAATACACTTCAAAAAGAAGTGTTAAATAACAGGAATTCATCCATGTTGGCTCATAACAAACAGAAAGAAGAACCGGGGAAAGTCCTATGAGAAAAATAATGAGTTTGAAATGGAGTCTTTTCATCAAATTAAACCAAAAGATGCCCGAATGCTAGCAAACGTGTGGACTACATGAGAACAGAGATAGTCCTCTACGTTTTGTAGTCAATTCTTTGCTTTACTAAAGCAAACTAAACGCCAAAGAGCTGCTGATAATCGCCATAAACAACAGCTAACTTTCAGTTTAGGTGTCCCTGATATCAATGCCCACAATCGGATAGTGTGGCTAATAACGGTTTTCAGTGTTGTATACAAGCCTTTGGGTCAATAGCTTTACATTTCATTTCTTCTCTCCACCTTACAGATTTCCCAAAAATCAGCAAAGCTAGTCAGGTTCTTTGCCTTTTCTTTTTTCTGTCTCCCCCCGCCCCCCACCCGCCCCACCTTCTCTGCTTTAGTTTTTCCTTCAATTAATACACATCCTTTTTTTTTCTATCTTTTCATTCAGAATTATCTAGCAAGATCCTATGACAATAGTAAATAAACGAAAAACTCAAACAGAAAGAAAAAGACATTGCTAAAGTATGAATGCCTTTATGTGAGAATATGTCTGAAGACAGATGTCTCTGTAGGGGAAAATAATAACCTTCCTAAGAATAACTGACAGTTGAGTGAGATTTTCCCTTGAAATAGAGAAAGAGACTGGGTGCAAATGGGAAAGTAAATGCAGTGCAAAGGATCAGAGCTGATGCCTATCTTTAGTCTCTGCCGTTTCCTGAGTGATGATGGGGGGGAAAATCACCTATTTTAATTGTATGATTTTACATATGATCTCAATACTGTAAAGCAAATTAAAATTCACGGCAGTCTAGGGTTTCCAAGATCATGGTTATTTGGGGATCCAACCACTATTAATTCATTGTTCCGGTAATAGCGACTTTAAATTCAGACAGCTCAGGAACCTCATTGGACCATTGAAAATCAGAGTGTTTTCTTTCAACATGGTGCACCACTAACCCCTTACCTCTCTCTCCTTCAG
Seq C2 exon
TGGTTCCATTCTTGTTGATCTGCTGTGATTGTGGAGGAGCCCCTGGTGGTGGAGCTGGATTCGAACCTGTTCCAGAATGTTCTGATGGAGCAATTCACACTTGGGCCGTAGAAGGGCCACAGCCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016853:ENSRNOT00000022665:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.504 A=NA C2=0.217
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGAAGACAACGTTCACCT
R:
CTGTGGCCCTTCTACGGC
Band lengths:
193-2185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]