RnoINT0057458 @ rn6
Intron Retention
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50194651-50195323:+
Coord C1 exon
chr16:50194651-50194827
Coord A exon
chr16:50194828-50195213
Coord C2 exon
chr16:50195214-50195323
Length
386 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CACCCCCTTTGGTCCTCTAGACA
3' ss Score
8.18
Exon sequences
Seq C1 exon
TTTCTCTCATCGTACAGCTTGTATCAGGGACATTTTCCCGAACACCGTGCTTGCAGACCTTAACATTGACAGCGTGTTGGCCCCAGATGCTTTTGTCTGTCGTCGCATTTGCACGCATCACCCCACGTGCCTGTTTTTTACATTCTTTACCCAAGCGTGGCCAAAAGAATCCCAGAG
Seq A exon
GTAAGGAGTTACCATTAAGGGTCATTTGCTCTCCTTTAAAACCAGCCAATCCAAGCGTGCTGCACAATCAAGATGGGAGCTATGCAAATAGCAGGAGGCTTCTGGACTCTGAGGTGGGTCTGAATTGTTGAAACGGACAGCATCAACAGGGAGGAAAGACCTTGGGACCACTGACAATAGAGCAAGGTTCGAACTTGTTCTGGAAAGTTCTTAGTGACAACACAATTCGCGGGACGTGACTTGGTGACTGGAGAAGCGGTGTTAGGGTTGTGGTTGCTATTAAATTCTTCTCCAAGTTACCTTTACTTTCCATACTTATTGTAACAGTGGTCTTTCTCTTTGGCATATTTACGTGATTTATTCACACACCCCCTTTGGTCCTCTAG
Seq C2 exon
ACATCTTTGCCTCCTTAAAACATCTGAAAGCGGATTTCCAAGCACACGCATCACAAAGAGCAACGCCCTTTCCGGGTTCAGTCTCCAGCACTGCAGGCACAGCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684:ENSRNOT00000041946:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF142951=PAN_4=PD(4.3=3.3),PF0002421=PAN_1=PU(61.9=86.7)
A:
NA
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCTCATCGTACAGCTTGT
R:
CTGGGATGCTGTGCCTGC
Band lengths:
287-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]