GgaINT0068412 @ galGal4
Intron Retention
Description
NA
Coordinates
chr4:60992576-60993605:+
Coord C1 exon
chr4:60992576-60992735
Coord A exon
chr4:60992736-60993495
Coord C2 exon
chr4:60993496-60993605
Length
760 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
TATTATTATTTTTATTATAGAAA
3' ss Score
6.65
Exon sequences
Seq C1 exon
ATTGTCAAATGGACATTTTTGAACACGAAGAATTTTCAGGAACGAATGTCACAAGTTTTTTCACTCCAGACACTTTTGCCTGCCAAACTATTTGTACTTATTTTCCAAACTGCTTGTTCTTTACATTCTTCACCAAGGAATGGCAAATAGAATCCCAAAG
Seq A exon
GTGAATTTGATAACTTTAAAGTCTCTGAAAGATATTTTAAAAAAACAACCAGACGAAACAAACAAACAAACAAAAAAGAACCCCAATCTTAGCCTTTTTGATCACCTTTTTATTATATTCTTGGAAATTATTGTTAAAGGTTTATTTTCTGTAAAACAGCTGTTTTTTGTTTTTGTTTTGTTTTGTGTTTTTGTTTTGTTTTTTTTTTTTACTGTGTTGCATCTGTACATTTATAATTTCCTATGGGTATTTCACTTGTCCTATGGTATGAGCAGGAATCTTGTACTTCAGCTGTATATCTGGTGTTAATCTGAAAAGAGATATGTTCGGCAAAGAGACAGCCTTTATGTTGTTTTGATAACTTAACGCTGAATTTTATAAAATTGTCAAGAGATGTCTAATTTCCTAGCAGGATTAAGTTATTTACTTGAAAAGCTTTTGAATCAAGCTACCGGATTTGAAAGTATTTCTTTTTAAAGACTGAAATTCTTTCTTTTATGATTAGCGGTGAGGAGTCAAAAAAGTTACAGTCCACAGAAAACAGAGGTGGAAAGAATAGTATTTCAATGAAACTGAAGCTTCTAAATTAACAGTGAATTCATTTTCGTATGAAATACTTCTACCGATACAAACTTTGGAAAAAAAAGCACATTTAAGAAAGAGCTCTCCCTTACCAGTATCTGAAACATAAATGTTAGAATATAAGAACAAATTCAATTACTTTTAATTTTTTTTATTATTATTATTATTTTTATTATAG
Seq C2 exon
AAATCTTTGCCTCCTGAAAACATCAAGAAGTGGAATACCAGAGGCACTTACGTTACGAGAAAATGCTATTTCAGGTTTTGGTCTCCTAAATTGCAGAAGACACTTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013571:ENSGALT00000037595:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
NA
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAATGGACATTTTTGAACACGA
R:
CAGGAAAGTGTCTTCTGCAATT
Band lengths:
267-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]