RnoINT0080226 @ rn6
Intron Retention
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50165817-50167340:+
Coord C1 exon
chr16:50165817-50165976
Coord A exon
chr16:50165977-50167230
Coord C2 exon
chr16:50167231-50167340
Length
1254 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTCTTGTTTATTTTTAATAGGAA
3' ss Score
8.29
Exon sequences
Seq C1 exon
GTTGCCCCATGGATATTTTCCAGCACTTTGCCTTTGCAGACCTGAATGTAAGCCATGTCGTCACCCCCGATGCCTTCGTGTGTCGCACCGTTTGCACCTTCCATCCCAACTGCCTCTTCTTCACATTCTACACGAATGAGTGGGAGACGGAATCACAGAG
Seq A exon
GTGAGTGTCAGCAGCATATGCTCCCTTCTTAGCCTTTTCCGGTCCTAGCAGAGGCTTGCAAGGGTCTTGCTGGTTTCCCTAACAGCGCTGGAGCCTGTGGTTTAACAGGATGCTTTTCAGACGGGTGCAGGTTACTTCGCAGATTAGCAGATTCATCCTCACACTTTCCTTCTTCCATAAAACAAACGCGCTATTCACTCAGACCACAGTGGCAGGGGCAAAGGGAGCAGGCAGCGTTCTCACTGGCATTAAGGTTGAGGATTGGCTTGGGTAACAGCTGCTCATGCAATCCATCCTTTAATCTTGTGAGAAATCCGAGCCCTGCTTACCCTGATCTAGGGTCTAGTCTGACCTCTTCATCTTTACACAACACTTCCTTTATGTATACCCTGGGGCCGGCAAAAGGATGCGTGTGGACGTAATACCGCAGGCAGCATAAATCCAAACCAACAGTCCTTTGATGCCTTCTCTTTTTCTTTTTCTAATTAGAAGGTGGACTTTAATCCTCTGTCCTCTTCTCTGGCTGTCTGTACTTACTAGGTTTTTTTTTTTTTTTTTTTTTTTTTTGCCGGAGGGAGAGGTGGCTCCATTTACATTTAAGCCCTGTGATATTTTGGAGTCTTGTTGTCTGACTGACTGAAGAGAATTTCTCAGAATACAATTTACAGAGTTGCTTTAAAAAGAAAGGAAGAAAGAAAGAAGGTAAGTAGGTAGGTAGGAAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAAGAAGGAAGGAAGGGTGGGTCTTAGTCAGGGTTTCTATTCCTGCACAAAACATCATGACCAGGAAGCAAGTTGAGGAGGAAAGGAATTATTCAGCTTACACATCCACATCGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCACACAGGGCAGGAGGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTACTTACTGGCTTGCTTCCCCTGGCTTGTTCAGCTTGCTCTCTTATAGAACCCAAGACCACCAGCCCAGGGACGGCACCACCCACAATGGGCTGGGTCCTTCCCCCTTGATCACTGGTTGAGAAAATGCCTTACAGCTGGGTCTCATGGAGGCATTTCCTCAAGGGAGTCTCCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGCTGACACACAAAACCAATCTGTACAGGAAGGAAGGAAGGAAAGAAAGAATATGTCTAGTGCTTCTAATGCTGTCTTCTTTCTCTTTCTTGTTTATTTTTAATAG
Seq C2 exon
GAATGTTTGTTTTCTTAAGACATCTAAAAGTGGAAGACCAAGTCCCCCTATTATTCAAGAAAATGCTGTATCTGGATACAGTCTCTTCACCTGCAGAAAAGCTCGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118:ENSRNOT00000019237:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
NA
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCCCATGGATATTTTCC
R:
CAGGGCGAGCTTTTCTGCAG
Band lengths:
270-1524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]