MmuINT0088129 @ mm10
Intron Retention
Gene
ENSMUSG00000109764 | Klkb1
Description
kallikrein B, plasma 1 [Source:MGI Symbol;Acc:MGI:102849]
Coordinates
chr8:45276975-45278127:-
Coord C1 exon
chr8:45277968-45278127
Coord A exon
chr8:45277085-45277967
Coord C2 exon
chr8:45276975-45277084
Length
883 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTCTCATTTATTTTTAATAGAAA
3' ss Score
6.88
Exon sequences
Seq C1 exon
GTTGCCCCATGGATATTTTCCAGCACTCTGCCTTTGCAGACCTGAATGTAAGCCAGGTCATCACCCCCGATGCCTTTGTGTGTCGCACCATCTGCACCTTCCATCCCAACTGCCTTTTCTTCACGTTCTACACGAATGAATGGGAGACAGAATCACAGAG
Seq A exon
GTGAGTGTGAGCGGCGTGCGCCCCCTTCTAGCCCTTTCCGTTCCTTGCGAGGGTCTTGCTCGTTGCCCTAACAGCGCTGGAGCCTGTGGTTTAACCGGATGCTTTTCAGCCAGGTGCAGGTTACTTCACAGATTAACAAATTCTTCCCTTCCATAAAACAAGCCTACTATTTAGTCAAACCACAGCGGCAGAGGCAGAAGGGAGCAGGAAGCATTCTCACTGGCATTAAGGTTTGGGATTGGCTTGGGTTACAGCTGCTCATGCAAACTGTCCTTTAATCTTGTGAGAAACCAGAGCCCTGCTTATCCAGATCTAGGGTCTAGTCTGACCTCTTCATCTTTACACAGCATTTCCTTTATGTACGCCGTGGGGCCTGCAGAAGGATGTGTGTGGACATAATACCATGGGTAGCATAAATCCAAACCAACAGTCTTTTGATGCCTTCTCTTTTTCCTTTTTCTAATTAGAAGGTGGACTTTAATCCTCTGTCCTCTTTTCTGGATGTCTGTACCTACCAGGTATTTTTTGCCAGAGGGAGAGGTGACTCTACTTACATTTAAGCCCTGTGATATTTTTGGAGTCTTGCAGTCTGACTGACTGAAAATAATTTCTCAGAAGAATACCATTTATGGAGTTGCTTAGAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAGGAAGGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGTAGGTCTGTCTAGTGCTTCTAATGCTGTCTTCTTCTTCTTTCTCATTTATTTTTAATAG
Seq C2 exon
AAATGTTTGTTTTCTTAAGACGTCTAAAAGTGGAAGACCAAGTCCCCCTATTCCTCAAGAAAACGCTATATCTGGATATAGTCTCCTCACCTGCAGAAAAACTCGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109764:ENSMUST00000026907:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
NA
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCCCATGGATATTTTCC
R:
CAGGGCGAGTTTTTCTGCAGG
Band lengths:
270-1153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types