BtaINT0082805 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009501 | KLKB1
Description
Bos taurus kallikrein B, plasma (Fletcher factor) 1 (KLKB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046352]
Coordinates
chr27:15338816-15340226:+
Coord C1 exon
chr27:15338816-15338975
Coord A exon
chr27:15338976-15340116
Coord C2 exon
chr27:15340117-15340226
Length
1141 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
TTGCTTTTTTTTGACAATAGAAA
3' ss Score
5.05
Exon sequences
Seq C1 exon
GCTGCCGCGTGGACATTTTCCAACACAGTGCGTTTTCAGATGTGGATGTTGCCGGAATTATCGCACCAGATGCTTTTGTGTGTCGAACCATCTGCACCTATCACCCCAGCTGTCTTTTCTTCACATTCTATACAAATGCATGGAAGACAGACTCACAGAG
Seq A exon
GTCAGTAGGCGTGTGTCACGCTTGCTACTGTCCTGGCATCATTTTCATTTTATACTTTGAGTTTTTCCCAAGTGTTTTCATTTCCCTCAAAACACTTGAACTCATAGAATGAACTTATGGTGACCAGAGGGGAAAGTGGCGGGGGAGAGGGATAGTTTGGGACTTTGGGGTGGACATGTACACACTGCTATATTTAAAGTGGATAACCAACAAGGACTGTATAGCACGGGGAACTCTGCTCAACGCTATATGGCAGCCTGGTTGGCAGGGGAGTTCGGGGAAGAAGCATATATGTGTATGTATGGCGGAGTCCCTTTGCTATCCACCTGAATCTATCACAACATTGTTAATTGGCTATACTCCAATATAAAATAAGTTTTTTTAATTAAAAAAAACACACTTGAACTCATAGTTTATTTTATTTATTTTTTTTTAATTTTATTTTATTTTTAAACTTTACATAATTGTATTCGTTTTGCCAAATATCAAAATGAATCCGCCATGAACTCATAGTTTAAATAGGTGCTCTTCTGCCAGGTGCAGATTAGTTAAGAGATTAGCAGAATTTCCTACCCATCTTCTCTTACTTAAACAGACCATCCAATCAATGAAATAATAACCCTGGATACCTTTTCTACTAATCTTAATGTTTTGTATTAGCTTGAAGTAAACCACTCACTGGGAGCATATCCTTTAAGCTCCTTTGTTCTGACCCCAGTGTTTCAGAAACTAGAGCCCTGTTTATCCTGATCAAGGTTCCGGTTCCATCTCTTGACCCATAGATAACCTGTCCTTTTCTTTACACACAAGATGGAGCTAAGAGAAGGGTATCAAGTTATAATAGCATCAGCAACATAAATCCCCAGAATCTGTTCTTTCTTCTTTTTTTTAAATTAGAAGGTAGAACTTTACCATTCTCCTCTTTTCGGGCTATCTGTGCCTATAAGTTTTCTTCAGAGGGAGATGTGGCTTGATTTACATTTAATCTCTGTAATTCACTAGAGTCCTGTAGTCTGATGTTCTTTGGAGGGAATTTCTCAGAAGAATAAAACTTGCAGGGGGTGTTTTTTTGATATTAGGTGTTCTTGTATTTGCCTTTAATGGGGTTTTCTTTCTTTCTCTTGCTTTTTTTTGACAATAG
Seq C2 exon
AAATGTTTGTTTCCTTAAGACTTCCCAAAGTGGGAGCCCGAGTTCCCCTACTCCTCAGGAAAATGCCATCTCTGGATACAGCCTTCTAACCTGCAAACAAACTCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009501:ENSBTAT00000012503:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
NA
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCGCGTGGACATTTT
R:
CAGGCAGAGTTTGTTTGCAGG
Band lengths:
270-1411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]