RnoINT0060181 @ rn6
Intron Retention
Gene
ENSRNOG00000019129 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:RGD Symbol;Acc:2313189]
Coordinates
chr1:85012677-85017239:+
Coord C1 exon
chr1:85012677-85013029
Coord A exon
chr1:85013030-85016668
Coord C2 exon
chr1:85016669-85017239
Length
3639 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
CCACTGTCACCTCTCTGCAGATT
3' ss Score
10.29
Exon sequences
Seq C1 exon
CTCGGCTCACCCCAACAGAGGCTTCCTGCCAAGGTGTTGTTCAGTGTGCATCTGGGCAGCGCTGCCAGATGGTGAGTGGGAAGGCCAGGTGTGTGGCTGAGTCCACAGCTGTCTGCCGCGCCCAGGGTGATCCCCACTACACCACCTTCGATGGCCGTCGCTATGACATGATGGGCAGCTGTTCCTACACCATGGCTGAGCTGTGTGGATCAGATGAGACCCTGCCAGCCTTCAGTGTGGAAGCCAAAAATGAACATCGGGGCAGCCGCCAAGTCTCCTATGTGGGCCTGGTCACAGTGTATGCCTACAGCCATTCTGTGTCGATGGTTCGTGGGGAAACTGGCTTCATTCGG
Seq A exon
GTAAGTATTCAGAGTTTAACACCCTTGAGCAGTCAATGGGAGTCAAAGCCTTGGTGTTAGACCCCCAAACTCAAGGCCTCTTCTGTACATGAAGTGGTAGGAAACTGGTGAGATTTGAAAACCAGTAGCAGATCTTTAAAACTCTTCCCTCTGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAACAACTCTTCCCTCACAAATGTCACCTCTAGAAATGTTAAGGACATTTAGTGACATGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGGTAATGATGCTATTTGGAAAAGCAAAAGGGAATTTAAAAAAAGAAAGTCAGAAAAGAAATGCTATAATCGTCCAACAATAGGGGATCTGTGATGTGACAAAATCAGTTAGCGATCATGGGCTGCGCCAGATCCATTCCCCAGTACGTGCCGTGCTCAGCACCTACAGGAGCTCTTCGAGAGATGCTGTATTGTGAACCGGCACAGGTAAGGAAATAGGCGGAAGGACATGCGTCAATTCCCAAGGCCTGAGAGCCAGCTCTTCCTAGGTTACACTTGGAAGAGGCTTCCGGCCGCATGGCCTCTGTGCCGAGTCTGGTGCCAATATTGCTTTAGTCAAGGCAAGCAGCAGCTCTCTCCCGTCCCTGCCACGTCACTGTGGAGTTAAGGCAAAGCTCCAAACAAGCTGAAGTCACAGTCCAGCTTGAGAGTGCCTCATCTGAGACGCTGAGGCCAGAAATGCTTCAGATTTTGAACTTCTAAAACTTTTGGAACATTTGCATATCCGTACTGTGAAGGCATCCAGGTCTGAACGTAAAATTTACTCAGTTCTCATACATTCCTAAACAAAGCCCACAGATAATTTTATATATGTTCATTGCGCACATTTCTTGAATCTTATTCGTCTTTACCGCGGGATGAACCCATGTGCAGCATTTTCCTAATGCTCACAAAATGTCTGATCCATTTATTATTCCAGATTCCAGATGTTGGAGTCAAGGGTATGTCATCCAGACAATGGCCGCCAGGATGCCAACCCCCTGCATAGATTCTAAACATTGTAAATTAACTCCTCATTTACCAGGACGTTCCCATCCGTTCACTCCTGTCAAATTGTCAGCTTTCCTCCCTCTTCTCTCTCCTACCCTACCCCTCCCTTCCCCTCCCTCTCTCTCTTCCCTCTCCTCTCTTCCTCCCCCACTCCCTCTCTTCCTCTCTCCCTCTCTCCCTCTTCCCCCCCCAATGTACTTGAAAATCAATTCCAGTCATCAGAACCTGTCACCAAAATGACTTCAACATATATATTGTTAACTAGAATGCAGTGTTCAGGTGATTTTTGCTTAATTTCCAGATAAATTTACATGTATTAAAACTCTGTAGCTGTGCCACATGAGATAGGCCTAAATCCAAGCTTCCGAGGAGGCTATGTGGTAAGCACAGCCAGCCTGGGCAACTTAGGGAAAGGCAAAGCAAAGAGAAGATGAGGAGGTAGCTCAGTGGCGCAGCGTCCACTTAGACTGCCGACGAGGGCACGCACGTGTAATCAGTGGCAGAGCGCCCGCCTGACATGGACAAGGCCCTAGTTTCTGTTTTAATTTTTATCTCAGTCAGAGTCTTTCTACGTAACCCTTGCTCCCCGAGTGCTGGGATGGAAAGTGTGTGCCACCACACCCGGGAAGCCCTAGTTTCAACCCACAGTAGCACACACATCCCCTCTCAAAATCCAATTCACACACCGCCAGTGGGCACTACCACGGCCACCCCATTAAGATGGATTTTTTTTTTCATGACCTAGGACAATTCCCTACAGCAACTTTCCAGACAGCTTCAAGCAGCCAGTCTCTCCTGGCCGTGCTCATCTTCCCACTTAGATTAGTTGCTCCACCCAGCATTTGGGAGACTGAGGCTGAGGAGGCCAGCCTCGTCTACACAGTGAGCATGGAGATGCACAAAAAACTCCACAAAAGGCCATATGATAAAACGTACCATTTCTGCATATGACACCATGGACTCTTTTTCTCATTCACACAAGAAACCACTTCTGTGGGTACTCCCCCCACCCCCGGGGCTGGGGACCGAACCCAGGACCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCCAAATCCCCAACCCCTGGTACTTTTTTTTAATATTGATTTTTTTAAAGGATTATTTATTTTATATATGTGAGTACACTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATTGGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTAAACTCAGGACCTCTGGGAGAGTGGTCAGTGCTCTTTACCACTGAGCCACCTCTCCAGCCCTTTATATTGATTTGTTAATGTTACTACTAATCTCTATTCCTTAGTGATGTGGCTGACCACTGTATTGCTAAGCTACATTCCAGCTCTCTTCCTTTTACTTTGAGACAGGGTTCACTGAGTTGCCTGGGGAGGCCTCACATTTTCAAGCCTCCTGCAGAGTATCCTGGACTCTTACAGGTCCTTCCAGGCTTGACCCCACAGTCCCTTCTCTAGGGAGCCTTCCTTAACTGGTGGAATTCATAAGGCCTGTTCTCAAAGCTTCCTATCCAGCCTCAAGGCCTCTGCCAGTGTCCCCTCTGTCCCAGAGGACGTCTTGGCTTGCGGATGTTGTCACAATGCTTTGTCCCCAGCGCTCTCCCAGCACAGGGCCAGAACAAAGCAAGCTTGTTCCATAGCAGGTGTCACAAGCGAGATGTGAGGCCGAAATAAGACACTTGGAAAGTGAAGGAAATTGAGGGTGTGTTCCAGGAAAAAAAGTGGCAGGAGGAGGCATTCAAGAACCTGTGCCACTTTGTACCCAGCTCAGAATGTGCTGGTGCTTGTGCAAAGCTGCCCCCTGGGCAGGGACTTTGCTATGCTGATTGATATACCACACTGATAACCATCAGAGCTGGCAGCCCTCTGGGAGATGTGACATCTTGGCACTTGCAGGTCCTGACTGGTTCTGCCCACAGCCTCCTGTCTCTCACTTGCTTACATGAACACGTATCCTGCCATCTCACTGGCTCCCTGCAGCTGCCCCTTGCTGCCCCCAGACCTGCCAGGTTCCTTCCTCACAGTAGCTTCATGCTTGTGATGGGCCTGCCGTTCTGCCAGCCACTGTTGGAGGCACTGGAGATAAAACCACGAGGTGGCCTCCCAGTGATTCAGACAGGGAGACCATGTGGGAAACTCGCACATTGTGAGAGAAGGTTAGAAGCTGTGGGGACTGGAGATCAGAGGAAGAGAGGCAGCAGGAACGGCTACTGAAAGGGTGATCAGGGACAGCCTCACTGAGCCAGTGACACCTCAGCAGACACTGTTGGGGGAAGGTCTCCATGCACATCTAGGGGAAGAACACTTCAGGCCACTGGAGGTGCAAGAGCAAATACCCCTAGACTCCACCAGTAATGAAGGAAGGAAAGAAGGAGGGAAGGCATCGTGTGTGGCTAGAGCTGGGCACTTGAATAGGGGAGATGAAGGGCTGGAGGAGAGATCGCACAGGGGTTTGACCACTGTCACCTCTCTGCAG
Seq C2 exon
ATTGACAATCAGCGCTCCCGCCTCCCTGCCTCTCTGAGTGAGGGTCGCCTGCGTGTGTACCAGAGTGGAACACGGGGTATTATAGAGCTGGACTTTGGGCTGGTGATCAGCTATGACTGGGACTCCCAGCTGACCCTGAGCCTGCCCAAGCGCTTCCAAGACCAGGTGTGCGGGCTGTGTGGCAACTATAACGGAGACCCTGCTGATGACTTCCTCACGCCGGACTTGGAGCAGGCCCCCAATGCCTTGGAGTTTGCAAATAGCTGGAAGCTGGATGATGGGGACTACCTGTGTGATGATGGTTGCCACAACTCTTGTCCCTCCTGCACCCCGGGCCAGATGCAGCACTACAAGGGGGACCGTCTCTGTGGCATGCTAGCTCTGTCCACAGGCCCCTTCTCTGCCTGTCATGAACTCCTGGACCCCAAGCCTTTCCTGGAAGATTGTGTGTTTGACCTGTGTGTAACTGGAGGGGAGCGGCTCAGCCTGTGCCGGAGCCTTAGCGCCTACGCCCAGGCCTGTGTAGAACTGGGTGTCACTCTTGAGAACTGGAGACAGCCATCCAACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019129:ENSRNOT00000057122:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=66.9)
A:
NA
C2:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]