RnoINT0061802 @ rn6
Intron Retention
Gene
ENSRNOG00000014288 | Fn1
Description
fibronectin 1 [Source:RGD Symbol;Acc:2624]
Coordinates
chr9:78907654-78910732:-
Coord C1 exon
chr9:78910594-78910732
Coord A exon
chr9:78907819-78910593
Coord C2 exon
chr9:78907654-78907818
Length
2775 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
CTTTCTCCTCCTTCTCATAGTCA
3' ss Score
9.35
Exon sequences
Seq C1 exon
TTCCAAGTTCCTGGAACTTCTACCAGTGCGACTCTGACTGGCCTTACCAGAGGGGTCACCTACAACATCATAGTGGAGGCCCTGCACAACCAGAGGAGGCACAAGGTCCGAGAAGAGGTTGTTACTGTAGGCAACACTG
Seq A exon
GTAGGTAACCCTGCTGGCCTGCTTGGCATCTGATTCTTGCTGGATCCGCCCAGAGAAGGCTTGGTCTACTGTTCCTTGTGTCTGAACTTAGGAAAAAGGACTGTATGTACAACCGCAGTCAGCAATGTCCCCTTAGGCAGTCCTAGGATGTTCACCAACACATATGATGAACGACAGTATGCCGAGACTGGGAGGGACAATAATGTTATTTAGTCTAATACACTCTGCCCTTCCTGTTGAGTGTCCAGTTAACAGAGGCAATGGTTTCTTGGTAGCTTTCACTATTCTCTTGTCCCATACCATGGTCCACTTAAGTGTTCCTGACCCAAACAGAATACCTATAAATTAGTTTTCCTTTACAGTGTTGTATTATGATGGCTTAGGTTTTGCTCCTAATGTAAAAACATCACCAGTATTGCCCCTTTCAAAGAGCTCCCCACTCCAAGTTTCAATTTTATATACTGCTTTTTAGATTTTAATTATTTTAATTTTATGTGCATGGGTGTTTTACCTGCATTTATTGAGGCCTTTGTGCAACATGCATGCAGTACCTATGGAGGCCAGGAGACGGGGCAAGATCCTCTGGAACTGGAGTTACAGGTGGCTGTGTTACCATGTGGGTACGAGGACATATCCTTGGTCCACAGAGGAGCATCCAGTGCTCTTAACTACTGAGCCATCTCTCCAGCCCTTTTATATGTGTCTTAAGACCCATATATATCAATGTCATGTTATATACATGCAAGCTCTTAATAAAGGTTAAATGGCCATCATACAAACTTAATAAAGATTAAATGACCCCTATGCAAAATCTTAAATGTTAAATGACCAGTTCGCAACATCTTAAAGGTTAAATAAATTTAATCCTGAGGAATCTTAAGAAAGGTCACATGATCCTTGGCTCATGTGTATCCTCTGGAATGTCTTTTGAAGCCATCAGTGTGTCATTTGGCTTTTTAAGTTGCAATGTGAGTTAGGGAATAACAGACTGTGGGTCCCGAGTCTTCTAACACAGTAAGGGCTAACTCCCACGTCTTCCGGGGAGCAGGACTTCTGGGTAGGACCACTTCTTTTCAGACTCCTTCCTCTGAGAGAAGACTGCTGTTTCACTCTTAAGTTAAGCAGTTGCCTGTCTGGCAGTGCAGAAGTGGGCAGAGACTTCCATCAACGGTAATCAGCATTTGCCTGTGGCTTCACTAGTAAAATGCCACTCGAAAGGGGTTTTTTCAAAAGCACGGGGGTTTTGTGGTTTCCCGCATTGGTGTGTTTCAGACAGAATCCTACTACACAGTGTGCTGGACTAAAATGGCCGTGCAGCTCAGGCTGCAGAATGTCAGAGCAGACTTCTAACTCCTAGATATTTTAAAATGTGATGCTCACGACAGTTCCAGCCCCTTTGTTCTCTTTCCAGCTCCTGGTTCCACCAGTATCCTTACCAGGTCCTCTTGCTTTCAAAACATTTTAGACTTTAGTTCTTCCAGAATGATGGCTTTTGAAATATTGATTGCATTTGCACTTTTGATTATTAAAAGATGTATCCTCAAGTGGGATTTAAAGTCAGTCATAGTAAGTTAGCTTATTTTACATTTAAGAATAACTTGGGGTGCACTTTATTTTTACCAAAATATCTTATTTCTCGCTGTAAATGCGTCTTGATGTTTTTACCTGTACGTGGAACATGGACGACGCATCGAATGTTCTGTGACTAGAGTTATTATAGACGTCTTAGAGACACATTCCCATGCTGAGAACCTACGCTAGTCTCTCTGGAGGAGCAAGCATTGATCTTGACCACTGAGCCACCTCTTCAGCCCTTGATTAGCTTTAAAAAATAATTTCTAATATTTTTAATTGTTAAAATAAAGATTTCTAAAACAGAGGGACGAAATCTTGGGAAATCCAATGAGGACTTTTTACTCATTCCTAAGTCATCTACACTGTGCTGAGTTCTCTGGCTTACTAGCCAGTTTTGTCTAGTTTTACAGTAACCATAAGAATATATATTTTGCAAAAGAAATGCCGTGATGCAAGTAAAGATTGCATTATAACGTTATGTAAAAATGTAAGACTCTTAGTATAAGCAAAGAATGGTATCTAACAGTAATTTTTTAAAGATTTATTTATTTATTTATTTATTTATTTATTTATTTATTATATATAAGTACACTGTAGCTATCTTCAGATGCATCAGATACCATTACAGATGGTTGCGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCGTAATCGCTGAGTCATCACTCCAGCCCCTAACAATAATTGTTAATTACTGACTAACAGCAGTTAGTAATTTCTGCCTAATGATGATGGGCCAGTGCTTTGATTTCATGGTTTCATGTAGCCTTTACAAGGTCCAAAGAAGTGGGAACATTTATATTATTATCCCATAATAGATGAGGAAAGAGAGGCTTGATACTCAGGGATCTTGGAGAAGCATAGCTGCCCACATTCTTAGCTAGTTAAAATGTCTGAAGATCTCTTTCACGTCATGAGAAACAGATTTCCTGGGAATGATTTGAAACAGAAGATGGGAACGAAGGAAGATGTTCTTTGACCCCGCTGTGGCAAGTACCCACTGGCTACGTCAAAGCGTTGCTGATGAGAACAACATCTGTGTTATTAGTGCTGCTAGATTAGGTCATGATGTACAGTAAATCCATTTCTTCGTCAATAACCATCAATAAGATGTCTTTTCCTTTTTTTCCCCTTTCTCCTCCTTCTCATAG
Seq C2 exon
TCAACGAAGGCCTGAACCAGCCTACGGATGACTCATGCTTTGACCCTTACACGGTTTCCCATTACGCCGTTGGAGAGGAATGGGAGCGGTTATCTGACTCTGGCTTTAAGCTCACTTGCCAGTGCTTGGGCTTTGGCAGTGGTCATTTCAGATGCGATTCATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014288:ENSRNOT00000019772:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(45.8=70.2)
A:
NA
C2:
PF0003913=fn1=WD(100=71.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]