RnoINT0061810 @ rn6
Intron Retention
Gene
ENSRNOG00000014288 | Fn1
Description
fibronectin 1 [Source:RGD Symbol;Acc:2624]
Coordinates
chr9:78957085-78958062:-
Coord C1 exon
chr9:78957883-78958062
Coord A exon
chr9:78957262-78957882
Coord C2 exon
chr9:78957085-78957261
Length
621 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CTGTGTGTTGTCTTGGGCAGTTT
3' ss Score
9.26
Exon sequences
Seq C1 exon
CTGTGACCCAGACTTACGGTGGCAACTCAAACGGGGAGCCCTGTGTTCTCCCGTTCACCTACAACGGTAGGACCTTCTACTCCTGCACCACCGAAGGGCGGCAAGACGGACATCTGTGGTGTAGCACAACTTCAAATTATGAACAAGACCAGAAGTATTCTTTCTGCACAGACCACGCGG
Seq A exon
GTGAGTGTCCCGGGAGAAACCCGATCAGGGCAATAGTCCATCCTTGCCGTACACACCCTTCTGCGTGCCAGCAGTCAATCATTAATTCTGAGGCTGCACAGGAACGACCGCTTTGATCTATTTGGACCCAACAGACACAGATAATCCCGCAGCAGAGGCAGTTTCCATGTCCCTTAGCCCCACTGGGGAAATGTCACCAAGGGAAGAAGCCCTACGGTTTGATTATTTTGACACGTACAGATTATGGTGTGATTAAAGGCACTCAAGTATTGAAATCAGTGGATGATCCCACAGAGCCGAGGAACACACAGGATAAATGTCAAGGGTGCTGGTACTTATCTTCTGTGTAGAGCTGTATTTTACACAAAGCTATCATTTAATCTTTTTTTTTCCTTTGGCTGGGAAAATGAGAAAACATGAGATTTAAATCTATTTCGAAAGTGAAGATGAAAATCCACTAAGAAGCTTAGGGCTGTATTATCAGATATCTTTTATTTGCGGATAGGCCCTCTGGGAATTAGCAGCCGGAACCTGGCTCTGTCTAAGCCTTCGGTAGTCTCTCCTTGTCGCACACCCCAAAGCTCAGCGGTAACCTTCCTGTCTGTGTGTTGTCTTGGGCAG
Seq C2 exon
TTTTGGTTCAGACTCGAGGTGGGAATTCCAATGGTGCCTTGTGCCACTTCCCCTTCCTGTACAACAACCGGAATTACACCGACTGTACTTCTGAGGGTAGGCGGGACAACATGAAATGGTGCGGCACCACCCAGAACTACGATGCCGATCAGAAGTTTGGATTCTGCCCAATGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014288:ENSRNOT00000019772:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=WD(100=68.9)
A:
NA
C2:
PF0004014=fn2=WD(100=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACTTACGGTGGCAACTC
R:
TGGGCAGAATCCAAACTTCTGA
Band lengths:
343-964
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]