RnoINT0061841 @ rn6
Intron Retention
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226713561-226718532:-
Coord C1 exon
chr2:226718470-226718532
Coord A exon
chr2:226713666-226718469
Coord C2 exon
chr2:226713561-226713665
Length
4804 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
AGTTAAAATTTTCTTTACAGAGT
3' ss Score
6.65
Exon sequences
Seq C1 exon
CATCTTCAAGAAGGACGAAAAGCTCAACAATACCTAGACATGTGTTGGAAACAGATGGATAAT
Seq A exon
GTGAGTAACAGTGTTTTCATGGTTAATCAGAAATGCACAGACTGACTTACCTTAAACCCCACTAAGCTTTACTTCTGAGTCTCATGTTTCTCAGTGTAGTAGGTTTGGCAGCAAGTACATTTCCCACCTGACCCCCCACACCCGCCCCCAGAGGGTGTGTCAGGGTCTTATTCTGTAGGCTGTGTAATAGGTGAGTTATTATTATTAATCTGCCATTTGTTTTGTTGTATAATAACCAAGAAATATAAATGGAGGGTTGAGCTCATTTCTTCTTCCTTTTTTCCTATGTAAATAGTGGGACAAATTCTCTAGGCTTTGTATTCTGATAAATACTAGAGATATTTATCTAATAAGTGGGGTTTGGAGAATTAGGAAACAGTTATCTTGGGAGACTATTTGCCTGAGAGGAGAGAACTATAAGATTGTGGTTTTTGAATGTTTTTAAGGACTGGATTTCTCCTGACCTCTTTAGCATATGAGTAGAGAAGAGTAAGGATTTCCTTACAGGAAGTGTTTCTTCTAGCTCAGTAGTCAAGTAGTTAGTTACGTAAGCTTCTAATTGCAGAAAAAGAACTTACAGAACAGACTTAAAAAAACATACTGTCTACTTAAAATTCCCCTAAGGTCCTTTCTGATGTGAATTTTAAAGGTTTTGTTACACATAAACAAGGTGTCCACATAGACACTGTAGTCTTCTTTACTGGATATGCTGGAGAATAAGTTAGACTTTTTAAATGTTCAGATTGCCATGTGCTTGGCTCTTTGCTAACATTTTTACAATAGGTACTATAGTCTTTATTGTGCTGAAGAAAGTTGTGTGTTTGTGTGTATTTAATTTGTCTAGTTGTGGTTGTCAGAGGCTTGGAGACTGAAAATGTCAAGTTCATGCCAGACCCTCTGGCGTCTCTTCATACTGTGTACATACATCCTTGAAAGCTCATGCGTGTATTTGCTATGTTTTTATGGTTTCCTGTTAAAATGAATATTTAAAACTTAGATTCTATTTCTATTTAAGTGATTTTTAATCACTAGTGCTGATTTAGAGTTCTTAGGTATATTAGTAGTCTGTTTTCATTTTCTTTATAATTGCTTTCACCAAGACTTTAAGGGAGGATTTTTAGTAATTAAAATTTAAATTACTGTCAGTGGCATCCTTAGTATCTGCCATCTAATAAGTATGAGAGAGCATGTGTCTATTTTCACTTGCACAGAATAACATACTCCTATGCTCAGGGGTATTTGTTCCTCTAGAAATGGGTGTTGGCATAAATCTGTTTACAGTATGTGCCGACTCAACCTTTAGAACAATTGGCAGTTATTAGGAAAAGTTACAAAGGTTATAAGTAAGACAGAACCATTACAAAAGTCAAGTATTTCAAATAATGTATTTTTTTTTCAAATCATTAACAATATTATGAAGTAAATTCAACCCTAGTCAGCCCTTTACATGCACTAGTCTCTGTATGTTCATAAGAAAACATGACATGGCTTTTATTTTTTGTGGAGCCTGGAATCCAGTGAAAGAGACCGATGTAATTTATATTTAATATATAGAAACAAATACAGAATCATATTTCCTAATTCTTTTTCTTTTTAGTCAAAACCAAGTTATAGAAGTCTACTGTGTCTGAACTAGCTGAAAGGAACTATAACAAACTAGGGAATGAGGAACTTGAACCAGTTGAAGGAAGAAGTTGGAAGACGTCACTTCTCCCAGGGTGAACAGTGGCATTTAAAAGGAAGGCAGAAGAGTGGCCGTGAAGGAGATCTGGACGGAGTGGTCAGAACCTAGGGAGATTAATGTTAGATGCTCCATGGAGCAGTCAGGAGGCTCCAGGTGACAGCTTAAAGTTTCCTAGGAATGCAGCTCAGAAGCAGCAACTCTTGTAGTCAGTGGTGGGGTGAGGTCACTAGGGCCACATGTCCTCTGTGCTTACTTCACCGCAGCGTGCTGGTTCCTCGTCTTCAGCTGTGCTGCACCAGGGTCCAGGAAAAGGGAACATTTCTTTTCTCACTGCTCTTTTTTAATGAAGGACATAAAACTGGCAGAAAACCCCAGCAGACTTCCTCCTAGGTGCCTTTGATGACCCTGTGGGGAGACTTGGGACAGCAAGCCACAGTTATTAACAGCCTCTGTATTGAAAGGCAGGTTCTGCTACGGAAGAATAGGGACTAGATGTCATTTTCTATATTGCATAATTATACATGGGGAAAGGAAGAGTTTTAATTCTTTTGTAGTTGTGATTGCTTTGCTGTTCCAAGAAAAGTATGTTTTTTTCCACAAAAAAGAAAAAGAGATACATAATAAAAAAAAACAAAAAAAAACCACTTGTTTGTAACTAGCCTCAATTTGTGTCAAAATTATTAACCCATAGCCACTGGACCACAGTGGATTGTATAAATACAAAATACTCAAGTCTTCTGCTTTCTTTTCTGAGAAGTTCTCAGAACACAGATCATAAAGCATTTTTCCAGACACAGACTTAATAGAGGCTCTCTCTGGGGATTCTTGCAAACTTGAATCACAGAATCTGGGAATTACACAGGGTTTTTCCAAGGAAACTACCTGGCTGTTTCACTCCAGAGGGAAAGACCAGGGTTAGCCAGCCCTACCTAGAGTGTATTTAATGGAAGAGCACACAGACATGATTCCCAGACAGTGAAAGAAAATATCAGATCAGAGACCACAATAATATATATAAGAAAAACAACTTAGAAGAAACAGCAACTATGAAAGGTAAAAAGCTTAAAAATAAGAATAGCCAAAGCTGGGATTAATTTTCTCTGTGGAATAGAGGAGATGCTATATCCATGGAATAAGGGTAGATACTATTAAAATTGAGGGTGTAAATAACAAAAAGAACATCATATAGGGAGAAATGAAAAGTCCATGAGAAAAAGACAAAATTGAAAACATCTTTTAGAAAGTAAATAAGAGGTTTCAAATACAAAACAACATAATAAAATTAGAAAATTTCATTTAGCAGTTTCTTTTCAAAATAATATTCATTTAAAAAATGGCTAAAAGTAAGTCAAGGAAAAACATGCCTTAAATGTAGAGTCCTGCATTTCTGGAGGAAAGATTTGCCAGCATCCAGTGCTGTGAGCCATCAGCACTTATCCTCATAGGAGCTGCCAAGGTGGCTCAGCACTCGGTCCCAGTGCTGACTGTAACCAGGGGTGGACAGGGATAGCTGACTCCTGCGCGTTCACCTCCACCTCAGCAAGTGCACACACGCTTAAGTAATATATAAACACATGCTGCAGCCTCTCCTGAAGCGCTTACGTGTGTGACATCTCAAAACTCCTAGGAGAGGTTCCAAACACCTAAGAAAGAGAGATTTAGTCTCAGCACCAAAATGATGCCACAAAAAACAAACAAACAAACAAACAAACAAACGAACACGCCTTTGACAATGAATCAGGAATTAGAATAGGATTAGGCATATCTCAGCCTACTTAGATGCAAACCAGACAATAATAGAATAGTACTTTGAAGTTTCTGAAGGAAACTGTTTCTGACTTCATACTTAACCACTTAAAAGTGGTGGTGAAGAGCTGTCCCAGTGGCATGGGATTCAGAAAGCCTGGACATGGTGGCCTGGGAGGGGAGGGGCTGGGGTGGGTGGTGACAATAAACACAGTTCTCACCTCAGAAATTAATGCTTTACAGACCTTGAAAGCTACTGCTAAATGTGATCCCGCAGAATGATAGTGAGCCTAATGTATCCCAAGGCACCCTTAGAGTGTAGGGAAGGGAGACCCCAAGGAAACCGCTGTCTGCTGAGATAGCTGGTATGAGTTCAAACTTATACAGGTCAGAAATTTAGGAGAAAATGAAACCAGAGAACAAAATTTGATAGATTTAAATAATTTGGGTTGAATTAACAGTAAATGTATATTGAAAATCAAACTTGTGTGTACATGAATGTATCATACCTCAGTTGTAAATAGCTTTTAAATTTTTTATTTTTTATGAATGAGTATATTTTTGTGAATTCTATGAATATATGACTTTCTGTGTATGTTTTTATGTGCGTATGTGTGTGCCCAGTGCCCTTGGAGGCCAGAAAGGGGTGTCATTCCCTGGAACTGGAGTTACTGGATCACAAGTCAGTCTTGTAGATACTGCGAACCAACCCAGGTCCTTGACAAGAGCTACAAGCACTCTTAACTGCTGATCCATCATGAATAGCTTTTTAAAAGTAATAGTATTTGAATTAGATAAAACTTGGATGTGGTGACACACGTACCCTAGTACTCTGAGGTTGAGGCAGGAAGATGAAATGTTCAGGACAGGTTGGTTCAACTACACAAGTGGATTCCAGGCCAGCTTGGACCACATAAGAAAACCCTGTTTCTGTTGGTTTAAGGAAAAACTCAACACAAAAACAAGTAGTCTTGTCTCCCTGCTGATAATATTCCTGAGATATCTGACAAAAACAACATAAAGCCACTTTGAAGGGATATTTCCATGTTAACTGTGTTGAGCTCCTATAAAAAAGAGCATGGAAGCAAACAGCAAAGCCAATGAAGACTCATTTATAACTCAATTCCCTTGTTATGGACAGAGATTTAGATGTTTTCAGTATTGGTCATGTTCCTGTTATTTTTCTTTATTGTCAATAACTAATAACTGATATTTAAGATAGAAATATTAGAATCAATATAAGTTGGTTATAGTAACTTATATTTAACTTTCCAAATTTGGACACATTTTACATACATTGTTTAGTTCATTTTTATATAATACACACTGGTAAATTTAAGCTACTTCACAAATAAGTTAAAATTTTCTTTACAG
Seq C2 exon
AGTAAAAAGAAATTTGAAAGAGAATGTAGAGAGGCTGAGAAAGCACAGCAGAGTTATGAAAGACTGGATAATGATACAAATGCAACCAAGGCAGATGTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798:ENSRNOT00000019244:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]