RnoINT0064439 @ rn6
Intron Retention
Gene
ENSRNOG00000061527 | Gck
Description
glucokinase [Source:RGD Symbol;Acc:2670]
Coordinates
chr14:86149146-86150828:-
Coord C1 exon
chr14:86150595-86150828
Coord A exon
chr14:86150128-86150594
Coord C2 exon
chr14:86149146-86150127
Length
467 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
TCTGTTTTCCTCCTGTTCAGCTT
3' ss Score
9.4
Exon sequences
Seq C1 exon
CGACTCCGGGGACCGAAAGCAGATCCACAACATCCTAAGCACTCTGGGGCTTCGACCCTCTGTCACCGACTGCGACATTGTGCGCCGTGCCTGTGAAAGCGTGTCCACTCGCGCCGCCCATATGTGCTCCGCAGGACTAGCTGGGGTCATAAATCGCATGCGCGAAAGCCGCAGTGAGGACGTGATGCGCATCACTGTGGGCGTGGATGGCTCCGTGTACAAGCTGCACCCGAG
Seq A exon
GTCAGCTTCCACCTTCGCTTGCGCTTCAACCTCCCAGGCTTCAACCTCTCCTTTTTTTTTTTTTTTTTAAGATTTATTCATTTATTATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATCTCTTTACAGAACCGATGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGTAATCGGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTCAACCTCTCCTTCTAAAGGGAGGCTCAAAGGGCGTGGCTTTTCAGTCATTTGTGAGCCTATCCTGTTTGGCTCTCCCTGGGCCAGGAAAGCTGAATGAATATACTGCAGTCTGGGGTGAGGGGTGGGGGTGAAGAGATAGGGTATGGGCTGCCCGTGGCGGGGTGGCAAAAGTGGGCTCTAAAGGATGGGAGTAGAAATAGCAGCTCTGTTTTCCTCCTGTTCAG
Seq C2 exon
CTTCAAGGAGCGGTTTCACGCCAGTGTGCGCAGGCTGACACCCAACTGCGAAATCACCTTCATCGAATCAGAGGAGGGCAGCGGCAGGGGAGCCGCGCTGGTCTCTGCGGTGGCCTGCAAGAAGGCTTGCATGCTGGCCCAGTGAAATCCAGGTCATATGGACCGGGACCTGGGTTCCACGGGGACTCCACACACCACAAATGCTCCCAGCCCACCGGGGCAGGAGACCTATTCTGCTGCTACCCCTGGAAAATGGGGAGAGGCCCCTGCAAGCCGAGTCGGCCAGTGGGACAGCCCTAGGGCTCTCAGCCTGGGGCAGGGGGCTGGGAGGAAGAAGAGGATCAGAGGCGCCAAGGCCTTTCTTGCTAGAATCAACTACAGAAAATGGCGGAAAATACTCAGGACTTGCACTTTCACGATTCTTGCTTCCCAAGCGTGGGTCTGGCCTCCCAAGGGAATGCTTCCTGGACCTTGCAATGGCCTGGCTTCCCTGGGGGGGACACACCTTCATGGGGAGGTAACTTCAGCAGTTCGGCCAGACCAGACCCCAGGAGAGTAAGGGCTGCTAGTCACCCAGACCTGGCTGTTTTCTTGTCTGTGGCTGAAGAGGCCGGGGAGCCATGAGAGACTGACTATCCGGCTACATGGAGAGGACTTTCCAGGCATGAACATGCCAGAGACTGTTGCCTTCATATACCTCCACCCGAGTGGCTTACAGTTCTGGGATGAACCCTCCCAGGAGATGCCAGAGGTTAGAGCCCCAGAGTCCTTGCTCTAAGGGGACCAGAAAGGGGAGGCCTCACTCTGCACTATTCAAGCAGGAATCATCTCCAACACTCAGGTCCCTGACCCAGGAGGAAGAAGCCACCCTCAGTGTCCCTCCAAGAGACCACCCAGGTCCTTCTCTCCCTCGTTCCCAAATGCCAGCCTCTCTACCTGGGACTGTGGGGGAGTTTTTAATTAAATATTTAAAACTACTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061527:ENSRNOT00000080147:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGACTAGCTGGGGTCATA
R:
TTCCAGGGGTAGCAGCAGAAT
Band lengths:
355-822
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]