GgaINT0004614 @ galGal3
Intron Retention
Gene
ENSGALG00000009754 | HK2
Description
NA
Coordinates
chrUn_random:10837728-10838703:+
Coord C1 exon
chrUn_random:10837728-10837961
Coord A exon
chrUn_random:10837962-10838398
Coord C2 exon
chrUn_random:10838399-10838703
Length
437 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
CTCCTCCTCCTCTTCCATAGCTT
3' ss Score
9.33
Exon sequences
Seq C1 exon
GGAGAAAGAGGGGCTGCAGAAAGCCCACGAGATCCTCACCAAGCTGGGCCTGGAGCCATCCCACGAGGACTGCCTGGCCACCCACCGCATCTGCCAGATCGTCTCCACCCGCTCGGCCAACCTCTGTGGGGCCACGCTGGCCGCCGTGCTGCGCCGCATCAAGGAGAACAAGGGGGTGGACCGGCTGCGCTCCACCGTCGGCGTGGATGGCTCCGTCTACAAGAAGCACCCGCA
Seq A exon
GTAAGTCCATGAGGCAACGGGGAGCTGGAGGAGGTTTGGCCTCATGATGATGTCCTATTGGCATCTCCACTGGATCCCATTTGTTGGCCATCTCAGAGGAGGTCTGACCTCACGGTGATGTCCTGTGGGCACCTCCATTGGATCCCAAAGTCCCTGTGAGCCATCCCAGAGTAGTTCTGGCCCCAAAGAAGCATCCCATGGGCACCTCCATTGGACCCCATTTGTTGGCCATCACAGAGGAGGTCTGACCTCATGGTGGGTCCCATGGGCACCTCCACTGGCTCCCATTTGCTGTCCATCTCAGAGGACATCTGGCCTCGTGGTGGCCCATGGGCACCTCCATTGGATCCCAAAGTTCACGTGGGCCATCTCAGAGTCTGACACGACCCATGGCGGCACACTCAAGCCTTCTTCTTCCTCCTCCTCCTCTTCCATAG
Seq C2 exon
CTTTGCCCGACGCCTCCATAAGACAGTGAGGAAGCTGCTGCCCGACTGCGAGATCCGATTCGTGAGGTCGGAAGATGGCAGTGGCAAAGGGGCGGCCATGGTGACGGCGGTGGCCTACCGGCTGGCGGCCCAGCACAAGGCCCGGCAGAAGATCCTGGAGGCGCTGAAGCTGAGTCACGAGCAGCTCCTGGAGGTGAAGCGGAGGATGAGGGTTGAAATGGAGAAGGGGTTGGGCAAGGAGACGCACGCGGAGGCCACGGTGAAGATGCTGCCCACATACGTGTGCTCAACTCCAGATGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009754:ENSGALT00000036098:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAAGGAGAACAAGGGGG
R:
TATGTGGGCAGCATCTTCACC
Band lengths:
358-795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]