RnoINT0066967 @ rn6
Intron Retention
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60100071-60105242:-
Coord C1 exon
chr3:60105036-60105242
Coord A exon
chr3:60100556-60105035
Coord C2 exon
chr3:60100071-60100555
Length
4480 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTTTTCTTTTCTTTTTCAGAGA
3' ss Score
12.6
Exon sequences
Seq C1 exon
AGGTACCCGGCCGCAGACGCCTAAGGTAGCTGACAGGCCCGCAGCGGCTCACCCCTCCCTTTTCTCGGAACGTGGTTGGGCATCTGCTGCTGGCTCAAGCCTTTAGAAGAGGGCTCCGGGCAGGAGATGACGGCAGTGTGCTCGCTGCCTAGTCCTCTGCGAGCACCGGCTTCCTTCTCCTCGCAGCCGGAGCTGCAAACCTAGCAG
Seq A exon
GTGAGATGAGCCCTGGTGGCGTTTGCTCTGGCGCCTGCCTCTGGGGTCTGGACCAGTGGGTAGCGCCAGGTTCCAGTGCCCTGGCGCCTCGGCTCGCTGCTGCGCCTGTTCGCTTCTGCTCCGCAGCGCCTGCGCCTGAAACCTGCATGAACACTAGAGATGGGCTACTCACAAGGGACGACTTGTACCCTATGGTGCCAGATCTGTGATCCCCAGGGTGCGGAGCACCCCGTTGCACGTGCGCCCACACTGTCATCTCAGACTTCTTACTTTATCCCAAGGTGGCCTTAGTATCTGCCCCTCGTGAACACCAAATACTTAGTGCTTTGCGCCAAATTTTCTCCCTTACTTCTTTATGGAGCACCTGACGTTGTGACTCCCATGTCCTGGCTTTCCACTTCCATGGGTGTCAGCTGCCCTCGGGATCTATTTGGTTAGGGACTATGCACCTCTTATCTTGGCGGGCCAAAGTCTGTCCCTGCAGATAGACAAGGGTAAAGGCAGTGAATGGAGTGCCTGTTGATGTTGAAGAATGCGTTTATAGTGCCGCAAGGCATTAGGCTTTTCTCCCATAGAAAGGATAGTAGTGTTTGAGAAGAGAACAGCCTCAGTTTAAATCTTCTTCTTTCAAGTTCACACTGCACCACATTTTAACTTAATAGCAATTAACCTACAATTTCAGTGCTTTGGTGATGTTATCTAAGTCAGATATGATGTGACTAGACCATTTGTATACTTCGTTTTCTAGTATCTGCCCCAGTGAACTGGCTTTTGCAGTGATAGGTCAACTTGTTTGTTCTGTAACAAGCCCTGTTTTTGTAGATTAAAGGACTAGATGGCATTTTTTTTAAACTTCCTTTGTTGTGGTTCTTGTTAATCATGAAATGTGCTTAGGAAGCGGTTTTTTTGTTTCGTTTTTTTTTTTCATGTTTAAAATGGTATGAGATAAAACTTTAGAGTTATTTTTAGGGTTTTTTCCCCCCTTCCTTATTTTGAGACAGCTGCTAATATAAGTCCTGGCTGGCTTTTCTTTGTAGCTGAGCTTGAACTCATGGTCCCTGCCTCTGCCTCCCTAGTGTTGGGATTACCGGTGTGTGACATTATGTCAGACTAGAAGTCATTTTAATTTTCATTTGCCTCAGGAACTATTGGTAACACTGGAAAAAAATTAAAAGGGGGAAAAGGGCAGATTACTTTTAAAAGTTTCATTTAATTTTCATTTAATTGAAAGTCGAACTCTGGGAGTTGTTAAACCTCTTGGCCATCACCATGGAGAGCTCTTTTCACTGTCAATTGCTACTTAAGATCAAACTCAATTCAACTCTCAATTGCTGGGTCTGAAACAGAGGCTGGTAACTTTGTGGACTATCAAGTATGTCTGTTGTTGAGAATCTTAAATGTCAAGTGTGTTTGTATAGCCAGTCAGGACAATGAATGCTATTCACCTTGTTACGGTTGTTAACATTATCATTAGGTCTACAATCTCTCTGCCCCCCTCTTTCTCTCATCCTCTTGGTTTATTCTTTGCTGGTTGTTCATTTGTTTCTTTATTTTTTGAAATAGTGTCTCAATGGCAGCCCAGTTGAATTTGTGCTCCTCCTACTTCTGTGTCCCAGGACTGGGTTTCCAGCATGGGGTACCACACTTGGCACTAGGACTATTGCTGCCATTTCTTGAAGGCCTACTCTGTGATGAGTTGTGCTTTCCATACAATATTTCTCTAAGTAGTTTTCCCACTCGTTTTACAGTAAAGGAAACTGACTCAGGGAGGCAAAGTAATTGGCCCAAAGAGCTGATATGCTAAGGCTCAAAGTCTACTACACTTTTCACTTAAATATTGTTAATTAAGATTGTGGTTTAACTAGATAAGATTGATGAAGCTAAGAAGTGCATGCTGAAAGGGAACGGATATAGATCTCTCCCGAGAGACACAGCCAGAGCATGTCAAATACAGAGGTGAATACTAGCAGCAAACCACTGAACTGAGAACGGGATCCCCTTTGGGGAAATTAGAGGAAGAATTGGAAGAGCTGAAGGGGCTTGCAACCCCATAAAAACAGCAATGCCAACCAACCAGAGCTCCCAGGGACTAAGCCACTATTCAAAGACTATACATGGACTGATCCTGGGCTCCAACTGCATATGTAGCAGAGAATAGCCTTGTTGGGGCACCAGTGGAAGGGGAAGCCCTTGATCCTGCCAAGATTGGACCCTCAGTGCAGGGGAATGTTGGGGGGTTGGTAAGGGGAGGTGAATGGGAGGGAGTACCCTTATGGGGGAGGGGAAGGGGAATAGGGGGCTTGTGGACAGGAAACCTGGAAAGGAAATAGCATTTGAAATGTAAATAAAGAAATATACCCAATAAAAAAAGCAATGAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAAGAACCCCCCCCAAAAAAAAAAAGCAATGAAAAAAGATTGTTGTTTAAGCATGTTAAGCATACACACACACACACACACACACACACACACACACACACACACACAAAACCTCCTTTCCTACTACCTTTCTAAGGACACATTTGTTAAGAGCTCCAATTTTTAATACTTAAGTCTGATTGTTAACCAGCTCCTTCAAGGATAACTGTGTGTCCCAACCAAAACCTGGCTGTGTGTATCAACCAGAACTTAGCTGTGTGCCCCAACCTGCCTGTGTGTATCCATATAATTTGGGGCTTATTTGGAAAGTTGGAAGTCTGTGACCACTCCTGCTTAATCCTGGTAGAAAAAAGGAAATACTTGTCTTAATCCTAATTACATATAAGGTTTTTAAAGGGCTTGGCTTCTAGAGAGCAACACGGGGAGTATTCTCTTACAGAACCCTGTGTATTAGTTGACCTTTGGTCTGCGCGGGCGTTTGAGAACTTAACCCAAGCATTGTAAATTGCACCAGATTCTTTTCTCCCATCTTATGTAAGGCTACTTTAGATGTAAACCTAGAACAAGAACTTAGAAATTGTTAATTACCATCACATTAGTTTCAAATTACCAACCAAAGCCAGTTCATCTCAGGATTATCTAAAGTTTGTGCTCCTTGTGTCTCTGGCAGAGGAGGGAGTGTGACAGTTGCCACATTAGCGCACAGAACGTGCTCTTTAAAATCTGAGCAGCTCTAGAACATTAGAATACAGTTTGTATTTTGGGGGCTTGTACTACTGTAAAAAACATTTGTCATTTAGAAAAGAAAGATTATTCGCTCATGATTTATACAATGCCTAAGAGGGGACAGACAGGGGGAGAAGAGACTGATTTAAGAACAGGTTGTTATTCAATGAATTTAATGAAAAATTTTAATGAATCAAGTTTGCCCCCCCCTAATGCCTATGTACCCGGTATTGTGCTAGATATTAGGGACGTTGCTTCTATGGCATTTAAAGTCTGGTAAAGGAGACAGGCATACGTCAGTCATTCGAAGGCCTTGGCATAAACAAACTGAGAAAAAGACACTAAAGGGAAGGCTCATGATTTTATTTGTGAACAAACCATGCCTAACTGTGTGATTAAAGGAACCTCACCTGATGAAATGACTCCTGAACCATCTGGTTGGGTTTGGGGTATGGGTGAGTGCTAATTATGTGGGCAGTGCAAATGGTAGACAGCCTTTTAGAGGGAACTCCATGTGCAGAGTCCCCTGTGGCACCAAGGGACTGTAGGCCAATGTGTGTGCTTACAAAACAGGAACTAAGAGAAGGCTGGTGAACTGATATCATTCCATCATTTTTTTCCCCCACAGGCGCCTTCCTACTCCACCAAAAGTTATCTTCCACTTTGGATAAGTGATTACTGTGTGCTGGCCGTGATTAGATTGTAGGGGCTGGCGTCTCACAGATGATAAAGCGAAGCACAGAAACTTAAGTTTTGAGTTCAAGGTTGGTAAGTAATACCCTATGGTTCTCCCTTATGCTCAAGCATGACCACAGGCTGGAAGGGACTGTCTTGTTCCAGTGTGACTCCTCGAACCATCCCTGAGAACTTCTGTCGGAGAATCTGGGTGCAACACTCTGCACACTGTGGCCCTCCTCTTGTCCATTAGATGGAGGTGAATGGTGGATCCCTGGAGAGAACCATAGGGCATCACTCTAGCTGTATTGTTTGCGGATCTTATTTTACCCAAGTCTGGCTCCAAAAATGGAATGGTAACATAAATATTTTGAGCTGACTTACCTTTGAGAGTGAGGCATCTTCCCCTCTGTCCCATTGTGTCTTCCCCTGGTGGAGAGTGAAGGGAGTACAGACACCTAGTTGGCCATTAATATGTGAGTACGTCCAGGTTTTCCTGAAGTCTGTTTCAGTGTGAACTCTGCTTGGTCATAACACTGAATTAATTAATTAATTAATTACTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTTTTCTTTTCTTTTCTTTTTCAG
Seq C2 exon
AGACCAGTCTGGAAGTACAGGGAGAGGGAAGATGGATTCTTATTTCCCAGCAAAGAACTCAACTCTTGCTGTTAATATGAATGAGACTTTGTCTGCCAGTCATGGCTTTAATTCCACCAGTGACCCACCTCCGATGTCAATAACCAGGCTCTTCCCAGCGTTACTCGAGTGCTTTGGCATCGTCCTTTGTGGGTACATAGCGGGAAGGGCCAATGTCATAACATCCACACAGGCCAAAGGACTGGGAAACTTCGTCTCCAGATTTGCCCTCCCAGCTTTATTATTCAAAAACATGGTTGTGCTTAATTTTGCCAATGTGGATTGGGCTTTTCTATATAGCATCCTAATTGGCAAGGCCTCTGTATTTTTCGTTGTATGCGTGTTAACCCTGTTGGTTGCCAGTCCTGAGAGTCGATTTAGCAAAGCTGGACTGTTCCCTATCTTTGCTACACAGAGCAATGACTTTGCTTTGGGATACCCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485:ENSRNOT00000025158:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0354713=Mem_trans=PU(66.7=73.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]