MmuINT0073081 @ mm9
Intron Retention
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73219881-73221015:-
Coord C1 exon
chr2:73220852-73221015
Coord A exon
chr2:73220366-73220851
Coord C2 exon
chr2:73219881-73220365
Length
486 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCTTTTCTTCTTTTTTGCAGAGG
3' ss Score
10.55
Exon sequences
Seq C1 exon
GGCTTCCTCATACTCCACCAAAAGTTATATTCAGCTTGGATAAGTGATTACTATGTGCCGGCTGTGATTAGACTGCAAGGACTCTACTTGAAGTAGACATTGATATTGGCACCTCACAGATGATAAGGTGAAGCACAAAAACTCAAGTTTGGGGTTCCAAGTTG
Seq A exon
GTAAGTCCTGCCCTACTGTGATTCTCCCTTGTGCTCAAGCATAGCCACTGGCTGGAAGGGACCGTTTGGTTCCAGTGTGACCCCTCAAACTATCCCTGAGAACTTCTGTCGGAGAATCTGGGTACAAGTGGGTCCTTGGCACCCTGTGGGCCTCCACCTCTTGTCCGTTAGATGGAGGTGGGCTGTGGAACCCTGGAGAGAAAGAACCAGAGGGCATCACTGCAGCTGTATTGTTTGTGGATCTTATTTTATGCACGTCTGACTCTAAAAATAGAGTGGTAACATAAATATTTTGAGCTGACCTACCTTTGAGAGTGAGGTACCTTCCTCTCCCCTTTCCCATCGTCTTTCCCCCAGTGGAGATTGAAGAGAGGGTGGGCACTTGTTTGGCCATTTAATATGTGAGTAAGTTCAGGTTTGCCACAGTCTGTTTCAGTCTGTGGCTGGTCTTAACACTGAATTGTTTTCTTTTCTTCTTTTTTGCAG
Seq C2 exon
AGGCCAGTTTGGAAGTGGAGGGAGAGAGAAAATGGATTCTTATTTCTCAGCAAAGAACTCAACGCTTGCTGGTGATATGAATGCGACTTGGCCTGCCTCTCATGGATTTAATGCCACCGGCGATCCACCTTCGATGTCGATAACCCGGCTCTTCCCGGCCTTACTGGAGTGCTTTGGCATAGTCCTTTGTGGCTACATAGCAGGAAGGGCCAATATCATAACCTCAACACAGGCCAAAGGACTGGGGAATTTCGTCTCCAGATTTGCCCTTCCAGCCTTATTATTCAAAAACATGGTTGTGCTTAATTTTTCCAACGTGGACTGGGCTTTTCTCTACAGCGTCTTAATTGGCAAAGCCTCCGTGTTTTTCATTGTGTGTGTATTAACCTTATTGGTGGCCAGTCCTGAGAGCCGGTTTAGCAAAGCTGGACTATTCCCTATTTTTGCTACACAGAGTAATGACTTTGCTTTGGGATACCCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762-Gpr155:NM_001080707:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0354713=Mem_trans=PU(67.5=73.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCCGGCTGTGATTAGAC
R:
CCTTTGGCCTGTGTTGAGGTT
Band lengths:
352-838
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: