HsaINT0071564 @ hg38
Intron Retention
Gene
ENSG00000163328 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:174481497-174487080:-
Coord C1 exon
chr2:174486873-174487080
Coord A exon
chr2:174481988-174486872
Coord C2 exon
chr2:174481497-174481987
Length
4885 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTTTCTTCCTTTCTTTCCAGAGA
3' ss Score
11.78
Exon sequences
Seq C1 exon
GCGGCCGGCGAGGGGCTGAGCTGACAGGGCCGCATCGGCTTACCCCACCTTACTTTATCGGAACGTGCCTAAGCTGCTGCAGCTGGCACCCGGTTGCGCTCGGCGAAGAGGGCTGGGGGCGGGAGATGACGGTGGTCTTCTCCCTGCTTGGCACCCTGCGAGCACCAGCTCCCTTCTCCTCGCCACTCCAAGGTTGCAGACGAAGCAG
Seq A exon
GTGAGAGGGGCCCCTGGAGCGCGGACCTGCTGGGTCCTGGTTCTCCCTTGCGGGCACGGGGTACCCCTGCCTCTGCCCCTCAGGCCTGGGCACGTGGGCAGCCGCCGACCCTCTGCGCCCTGGCCCCGCGGCCCGTTGTCTGGACCTGCTGTCTCTGCCCCGCAGCGCCTGCCTGTGGAACGTGTGAGATCACCCGGGAAGGCTCGCGCGGGGGAGGGGGTGTCTCGTCCCCTCCGGAGACAGAACTGCCATCCCTAGTTTGGGAAGCTCCTCACTGCACGGGCGTCCACCCTGTCTTTCTTAGACTCTTCCCTTTATCCCGAGGGTACCCTCAGTATCTGGCCCTTCCGAAGGCTTCTGCCCAGGCACCTGGAGCACTGCGCCAAATTTTCTCCCTTACCCGTTTTTGGGGTATGTTAGTTACCATGACGTTGTGACTCCCGTGCCCTGGGAAGACTAGCGACCACCTTTTTCTTACGCCAGGCAAAGACCCCTGGCTGCCTTTCCACTTCCACAGCTGCCTTCCCAGGGGTTGGCTGGCAGCTGCTCTCCGAGCAGCCTATTCGGTTAGGAACTCTCTGCGCCCCTTATCTTGGAGGGCCACAGTCTGTCCCTGCAGACGAGGCAAGGAGGCAGTGCTCAGCGCTCCCTACCCTGGGTCTCTAGGGAGGACATTTGGCGCCCTGCAAGTAGGTAGGAGTGGGTGAATGGTGCGACTATTAATGTTGAAGAGTGCTCTAATAGTACCACACTGTATTACACTTATCCCACGGGATAAAGGATGTTGGATGTTTGAGAAATAGCCTGAGAGTTTAAAGCTTTCTCTATGAAGTTAGTCAACCCTCGCCTTCCCCCCGCATTTTCACTTAATAGCAGTTATTTACAGTATCAGTGGTTCGTTTATGTGATCTAAGCCAAATGTGATGTGGCTAGAAGCGGTTTGTAAGTACAGTAGCATTTCTTCAGTTCGTGCCTCAGCGAGTGGTCTTTTACTGTGAACGTGTTTGTTCTGTAACAAGCTTTGTTTTTATAGATAAAAAGGCTGGATGTAATTTTTTTTTTAAAACTTCCCTTGCTGTGGTTCCTGTTCATTTTAAAATATGCTTTAGAAAGCATATTATCTTCCCGTTTAAAAAAGATTAGGATGAAATGAAACTTTTAAAGTCATTTTGATTATTTTGACTTTACCTCAGCAGGTATTTCTTTTATAATACTGAGAAACGTTAAAAGAAACCTCATGGGGAGGGGCAGATTGCTTTTTTTTTTTTTTTTTCTTGAGACGGAGTCTTGCTCTGTTGCTCAGGCTGGAGGGCAATGGCAGGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTGCAAGAGATTCTCCTGCCTCAGCTTCCCGAGTAGCTGGGATTACAGGCATCTGCCACCAAGCCCGGCTAATTTTTGTCTTTTTAGTAGAGACAGGGTTTCACCATGCTGGCCAGGCTGGTCTCCAACTCCCGACCTCAGGTGATCCGCCCGCCTCGACCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCCTTTTTTTTGTTTTGTTTTTTTGTTTTTTAATTTTTCAACGAATTGAAAGTTAATCTTGGACATTGCTACAACTATTTGACCATCACCCTGAGAAAAATGAAGAGCTCTGCCTTCACTGTTAACCATTTACTATCAAACCAAATTAAATTCAACTTATCTTAATTGTTTGGTATAAAACAAAAACTGATAAATTTATGACGCATCCCATCCCTCTTTTTTTAGTTGGTGGATCTTTTACCAGTTATGTTTGAAGAACTAACATGTTTACTTTTTTATCATTATTAGTAGTAAGACAACAGTTCCTAATAGCAATTGCTGCCGTTTTTTGAAGGCCTACTCTGTGATAAGCTGTATATAAAATATTCTATCCACACAATATCCCTCTAAGGAGGTCTTTGTTTGAGACAGGGTCTTACTCAGGCTGGAGTGCAGTGGTGTGATCATGGCTCACTGCAGAGACCTCCTAGGCTCAGGTGATCCTCCCACCTCAGCCTCCCAGGTAGCTGGGACAACAGGCACGCATGACTAAGCTCAGCTAATTTTTTGTAGAGACTAAGGTTTTGCCATGTTGGCCAGGCTGGTCTGAAACTCCTGGGCTCACACAGTCCACCTGCCTGGGCCTCTCAAAATGCTGGGATTACAGGCGTGAGCTGCTATGACTGATCCCTATAGGGAGGTTTTTACTCTCATTTTACAGTTGAGGAAACAAAGGTTCAGAAAGACTAAGTAACTTATGAGTTGATAAACCATAAAGCTCAGAATCTGTTTGACTCTCCACTGAACTTCTGCTAGTTTAAACTGTTGGTTAAAAAATATTATTGGAATGCCTTGACATGCTCGTGTTGTACAAGTAAGGGCTTATAAGCAGAATGAGTTATTAATACTCTAGGCACTTTTGAAAGTGAACAGAAGACTGGATTAATTTATCACTTTCCTGTTTAGCACTGCCTTTCCAAGTACACACCGTCTTAAGGGCTCCAAATGTTTAACGCCTTTGTTTAATTGTTTACCAGCTCCTTACTTCAAGTATGTGTATCTGTACCAACCGGTAGCTTTCCCAAGATATAATTTGATGCTTATTTGGTAAACTTCAAGTATGTGAGTAGTGTAGGTTTCATGTACTATATTGACCACTGCTATCTAATCCTAGTAGGAAAATACTTGTCCTAATCCAGATTAAATATAAGGTTTTCAAATGGTTCGGTTTATACAAGGGTAGCACAGAGAAAATTCCCTTGTACCCACGCCAGCTATCAGTTGTTGGTGATCTCTGGGCTGCCATCTAAGTCTTTTTAATGTGATATAGATGTTTGAGGACTTAACCTGAGCATTGTAAATTTCTGGAAGCATGAGCTTTTTACTTTCTACCTTATATCAGTCTACTTTAGATGGTAAACCCAGAATAATCACTTAGAAATTGGCTATTGTTGGCTGGGCGTGGTGGCTCACACCTATAATCCCAGCATTTTGGGAGGCCGAGGCGGGCAGATCACCTGAGGTTGGGAGTTTGAGACGAACCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATTCAAAATTAGCCAGGCATGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAAGGCTAAGGCAGGAGAATCTCTTGAACCTGGGAGGCGGAGGTTGAGGTGAGCCGCAATCACGCCATTACACTCCAGCCTGGGCAACAAGAACAAAACTCCATCTGAAAAAAAAAGAAAAAGAAATTGGCAATTGTCGTCATTTTAATTTCAAGATACTAATAAAAGCTGATTAGCTTTAGAGTTATCCAGACCTCATGTTCATTGTGTTCCTGGCAGCAAGAGGGGGTCTGATAATTATTGTACTATTCGTGTTTTGAATTTGTTCCATGCTTTAGCATTTTCTGAACCTCTTTAGAACATTTTACAAAACATTTTGTATTTTTTAACATTTCATGAACACCTTTAGACATATTTTGTGTTCTTGGTTCTGTTGCTGTAGTGGAAAACTTATAATACTTTATCATTCAGAAAACAAAAAAAAATTCTGTCTGTAAACTAAATAGTGCCTGAAAGAGAACATTGATCCATGAAAGGGTAAAAGGTTTAAGTATAAGTAATTATAGTTATTCATTAAAAAAAATTTTTTTTTCTGTCTCGTGTATGCCAGGTACTGTCCTAGATGTTAAGGACACAACATTGAGCAAAAACATGCATAGTCCCTGCTTCCGTGACACTTGAGTGAACTGAATGTGCAAAGTCCCTGTGGCACAAAGTCCCTGGGGCCAGTGTGTGTGGCGGGTGTAGAAGGAGCTAAAGGTATATTGGTGGGAGGTCGTCATTTTTTTCTCTCTCTCATGTTCTACCAAAAGTTATATTTAACTTCCGTTAAGTAATTACTCTGTTCCAGATGTGATTATAAAGACTTCAGTGGAATAATCGCAAGTTCCCATGTGGTAGGTATTACTATTATTGCCATTTTACAGGTGAAGAAGGTGAGACACAGAAAAGTTAAAGTTAATTCGTTCAGGTCGGGCACAGTGGCTCATGCCTGTAATCCCAGCACTGTGGGATGCTGAGGCAGGCAGATCACCTGAGGTCAGGAGTTCAAAACCAGCCTAAGCAACATGTCGCTACAAAAATACAAAAATTAGCCGGGCGTGGTGGCACACGAATCGCTTGAACCCAGGAGACAGAGGTTGCACTGAGCTGAGATTGCACCACTGCACTCCAGCCTGGGAGACAGAGCAAGACCCTGTCTTTAGAAAAAAAAGTTATTGGTTTAAAGTTGATTAGTAGTGCTCTACTATACCCTTCTTCCCATCCTATATTCAAATATGACCACGGGCTGGAAAGGACTCTGGTCCCTGGGTGACTCCTCAATGTAGCCTTGAGAACTTCTGAAATTTCCAGAGAATTTGGATGCATGGGGACATTCAGCGGAGACTATGTGTGCCCGATGCCCTTATCCACCAGGCGGAGCTCAATTGATGGAGAGAATCACTGGAGAGAACCACAGGGCATCACTGCAGCTCTAATATTTGCGGATCTTATTTTACTCATGTCTAATACTGAGTATAGAACTTAGCAACATAAATATTTTGAGCTGACCTGCCTTTGAGAGTGAAGCGATTATTGTTAGCAACCCCCCACTTTTTTTTCCATTGTATTTTCCCTGATGGTATGTATATTTATTTGGCCATTGAATAAGTAAATAAATCTAGGGGTATGTATATTTATTTGGCCATTTAATAAGTAAACAAATCTAGGTTTGCCAGTGTATTATTTCAACTAGAATTCTTGTTGATGGCCATACTGAATCTTTCTTCCTTTCTTTCCAG
Seq C2 exon
AGATCTGGTTGGAGTTGGAGGGTGAGAGAAAATGAATTCTAATTTACCTGCAGAGAACTTAACCATTGCAGTCAATATGACCAAGACTTTGCCTACAGCAGTAACGCATGGATTTAATTCCACTAATGACCCACCTTCAATGTCAATTACAAGGCTTTTTCCAGCCTTACTGGAATGCTTTGGCATTGTCCTTTGTGGCTACATAGCAGGAAGGGCCAATGTCATAACATCAACCCAGGCCAAAGGACTAGGAAATTTTGTCTCCAGATTTGCACTTCCAGCTTTATTATTCAAAAACATGGTTGTACTTAATTTTTCCAATGTGGACTGGTCCTTCCTATATAGTATCTTAATTGCCAAAGCTTCTGTATTTTTCATTGTATGTGTATTAACCTTATTGGTTGCCAGTCCTGATAGTCGATTTAGCAAAGCTGGACTATTCCCTATTTTTGCTACACAAAGTAATGACTTTGCATTGGGATACCCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163328:ENST00000392552:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0354713=Mem_trans=PU(67.9=72.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development