HsaINT0071564 @ hg19
Intron Retention
Gene
ENSG00000163328 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:22951]
Coordinates
chr2:175346225-175347886:-
Coord C1 exon
chr2:175347738-175347886
Coord A exon
chr2:175346716-175347737
Coord C2 exon
chr2:175346225-175346715
Length
1022 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
CTTTCTTCCTTTCTTTCCAGAGA
3' ss Score
11.78
Exon sequences
Seq C1 exon
GTACTGTCCTAGATGTTAAGGACACAACATTGAGCAAAAACATGCATAGTCCCTGCTTCCGTGACACTTGAGTGAACTGAATGTGCAAAGTCCCTGTGGCACAAAGTCCCTGGGGCCAGTGTGTGTGGCGGGTGTAGAAGGAGCTAAAG
Seq A exon
GTATATTGGTGGGAGGTCGTCATTTTTTTCTCTCTCTCATGTTCTACCAAAAGTTATATTTAACTTCCGTTAAGTAATTACTCTGTTCCAGATGTGATTATAAAGACTTCAGTGGAATAATCGCAAGTTCCCATGTGGTAGGTATTACTATTATTGCCATTTTACAGGTGAAGAAGGTGAGACACAGAAAAGTTAAAGTTAATTCGTTCAGGTCGGGCACAGTGGCTCATGCCTGTAATCCCAGCACTGTGGGATGCTGAGGCAGGCAGATCACCTGAGGTCAGGAGTTCAAAACCAGCCTAAGCAACATGTCGCTACAAAAATACAAAAATTAGCCGGGCGTGGTGGCACACGAATCGCTTGAACCCAGGAGACAGAGGTTGCACTGAGCTGAGATTGCACCACTGCACTCCAGCCTGGGAGACAGAGCAAGACCCTGTCTTTAGAAAAAAAAGTTATTGGTTTAAAGTTGATTAGTAGTGCTCTACTATACCCTTCTTCCCATCCTATATTCAAATATGACCACGGGCTGGAAAGGACTCTGGTCCCTGGGTGACTCCTCAATGTAGCCTTGAGAACTTCTGAAATTTCCAGAGAATTTGGATGCATGGGGACATTCAGCGGAGACTATGTGTGCCCGATGCCCTTATCCACCAGGCGGAGCTCAATTGATGGAGAGAATCACTGGAGAGAACCACAGGGCATCACTGCAGCTCTAATATTTGCGGATCTTATTTTACTCATGTCTAATACTGAGTATAGAACTTAGCAACATAAATATTTTGAGCTGACCTGCCTTTGAGAGTGAAGCGATTATTGTTAGCAACCCCCCACTTTTTTTTCCATTGTATTTTCCCTGATGGTATGTATATTTATTTGGCCATTGAATAAGTAAATAAATCTAGGGGTATGTATATTTATTTGGCCATTTAATAAGTAAACAAATCTAGGTTTGCCAGTGTATTATTTCAACTAGAATTCTTGTTGATGGCCATACTGAATCTTTCTTCCTTTCTTTCCAG
Seq C2 exon
AGATCTGGTTGGAGTTGGAGGGTGAGAGAAAATGAATTCTAATTTACCTGCAGAGAACTTAACCATTGCAGTCAATATGACCAAGACTTTGCCTACAGCAGTAACGCATGGATTTAATTCCACTAATGACCCACCTTCAATGTCAATTACAAGGCTTTTTCCAGCCTTACTGGAATGCTTTGGCATTGTCCTTTGTGGCTACATAGCAGGAAGGGCCAATGTCATAACATCAACCCAGGCCAAAGGACTAGGAAATTTTGTCTCCAGATTTGCACTTCCAGCTTTATTATTCAAAAACATGGTTGTACTTAATTTTTCCAATGTGGACTGGTCCTTCCTATATAGTATCTTAATTGCCAAAGCTTCTGTATTTTTCATTGTATGTGTATTAACCTTATTGGTTGCCAGTCCTGATAGTCGATTTAGCAAAGCTGGACTATTCCCTATTTTTGCTACACAAAGTAATGACTTTGCATTGGGATACCCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163328-GPR155:NM_001033045:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0354713=Mem_trans=PU(67.9=72.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTCCCTGCTTCCGTGACA
R:
TAGTCCTTTGGCCTGGGTTGA
Band lengths:
354-1376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)