RnoINT0067125 @ rn6
Intron Retention
Gene
ENSRNOG00000018666 | Gpsm1
Description
G-protein signaling modulator 1 [Source:RGD Symbol;Acc:628682]
Coordinates
chr3:3777628-3778624:+
Coord C1 exon
chr3:3777628-3777783
Coord A exon
chr3:3777784-3778515
Coord C2 exon
chr3:3778516-3778624
Length
732 bp
Sequences
Splice sites
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
3' ss Seq
GATCGTCTAACCATCCACAGGGT
3' ss Score
7.55
Exon sequences
Seq C1 exon
GAAGACGCTGCAGCTGTCTCGGCAGCTCCGGGACCAGGCCGTGGAAGCACAGGCTTGCTACAGTCTGGGGAACACCTACACACTGCTGCAGGACTACGAGCGGGCTGCTGAGTACCACCTGCGGCACCTTGTCATTGCCCAGGAGCTGGCTGATAG
Seq A exon
GTGTGTGAGAACACGGCCTTGGCTGGGACTACCTTACAGTGACAGCCCGGGTAGGAGTACCCGCACCCTACGGACCACAGCATGCATGATCAGAGCAGCCTCCCACCCTAGGCCCTCAGCCAATCCCTCAGTGGGAACCAATTTAAGTAAATAGGTAGGTTAAAGGCCTGAAGGGGCCAGTGGCCTCCAACTCTGGAATAGCCTTCTGTGTAGATCTGTTTGGAGCAGGGTTCCAGAGCCACAGACCTGTGGTATGATGGGAGGTATCCTACAAGAACTGTTCTGTCCTTGGGGCTTCCGTGGGAGGGGCAGGTAATGGAAGTGTCCTGGAACGAGGTAGAGATGGTGGGAATAGCAACAGGAACAGCTACACGTCCCTGAGAGCACATTCACTTGGGACCTGGGTGAGGGAGCATGGACAAGCTGCTGGGAGGCACCTGCTGGCCACTAGGGGGCGATCCAGGCCTTGAGGAACGGTACACACTTGCTGGACCCTGAGGGCCCAACTGGCCCCAGGGTAAGCTGGTAACAGGCTTAGGTTCATCAAGTTTCTTTCCACAACAAAGCACAAAAGTGTGGTTGGTCGGCATGTCTCCCTCAAGGGGTGGACCAGGGAGCACCATGGCAAGCACGGTGCTGTTGGTACATTATGTACCAGGCTTGGGAGAGGGTCAGGGACTTGGGGCAGTCGACAGTCCTGGAAGGCAGGTGTGATCGTCTAACCATCCACAG
Seq C2 exon
GGTGGGAGAGGGCCGAGCTTGCTGGAGCCTGGGGAACGCCTACGTGTCCATGGGGAGCCCCGCACAGGCCTTGACCTTTGCCAAAAAACATCTGCAGATCTCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018666:ENSRNOT00000067840:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(61.5=90.6)
A:
NA
C2:
PF134241=TPR_12=PU(50.0=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACGCTGCAGCTGTCTC
R:
TCCTGGGAGATCTGCAGATGT
Band lengths:
264-996
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]