RnoINT0070970 @ rn6
Intron Retention
Gene
ENSRNOG00000006116 | Hk2
Description
hexokinase 2 [Source:RGD Symbol;Acc:2797]
Coordinates
chr4:113578244-113582765:-
Coord C1 exon
chr4:113582617-113582765
Coord A exon
chr4:113578364-113582616
Coord C2 exon
chr4:113578244-113578363
Length
4253 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CCTCCCGCTTGTGTCCTTAGCTG
3' ss Score
8.94
Exon sequences
Seq C1 exon
AACATGGGGAGTTCCTGGCTCTGGATCTTGGAGGAACCAACTTCCGTGTGCTCCGAGTAAGGGTGACGGACAATGGCCTCCAGAGAGTGGAGATGGAGAACCAGATCTACGCCATCCCTGAGGACATCATGCGGGGCAGTGGAACCCAG
Seq A exon
GTACAGTCTTCCTGTTGTAGCCACTGAGCTGGGGGACACTCTGCCCTTCCCCCACCACAGAAGGACAGTCACTAGGACATCCTGCACACTGTTCCAGCTGTAAGGTTTCCCATGGACCTCGACAGCCTGACTGACCTTGTCTCACCAGCTGAGTGGCTCCTGGACGAAGGAGGTTTGATTGTGAGCTGAGCTAGCAAGGAAGGTAGCAGATCCTTTGCTTGTCTTTGGGCATGACCCTGACGCTCACCTTGCCTCCTTTGGAGGCTGGGTATCTGGGATTGTGGGCATTTTCCTGTGGAGGCCCAATGGTGGGGTGTTTGCTTAAGATTAGGTCCTGTTTTGGGACGATCTCACTTTATGATTCTGGGCTAGTGGTTATCAGGCAGCAGTACCCCAGTCTGTTTGTAGAGAGGGATGGTAGGGTCCTGGTTAGATCGTGGGCTAAGAGAGGAGCAACAACTGGCAGGCGTGCCGGGGCCTGCTGTTTTCCATGGGAGTTCGCTTGTTCTTCAGATTTTCTTCTTCCTGCTCTGTATTGTGCCACAATGGTGTTGTTCCGCCTCATGGAGAATGTGGTAGGCTTTTCTCCATACTGCTTCTGTCTCATTCTGGGCCCTGCTCCCAGATGACAAATATTTGAGAACCAAATAAGACAGTGCCAGAAGGGACTCCAGAAGTTAGGCTGTGGTTGTGAAGAGACTTGCAGTGTGCTGGGCAAGTCTTCCGTCTCCATAGACCCCTTATGTAACATGGGAAGGGCCCAGGCACCCCATGATCCTGGCAGCTTTTCCCTTCAGAGCCTGACGGGCTGGGGGGACTCCAGTTGACATGTGCTGTGTGTCTGTCAACCTAGAAAGAGGATCTGTTTCAAACATTCAGGACCCCAGAAGTTAAAATTTACCTTAATCTCTCAGACTGACACAGGTGTAATACTTGCATTTGAGACGCTGCGACTGGAGGACTGAGAGTTCAAGGCCAGCCTGGGCCATATATAGTGTGAATTCGTTTCCAAATGAAGATCAAACCTGTGGAAATAATTAAAATATGACAACTAATAATAAAAACAATCCAAACCACCAAGTTAGAAGGATTAAAGAAATCATTTCTATTCCTTTTCTTTTCAGCTACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGGTCAGAGTATAATTTGTGGGAATCAATTCTGTCTACTATGTAGATTCTGGGGTTCGCACACAGGTTCAGGCTTGGTGCTGTTATCTCACCAGCCCAGTTTAATTATTTTAATTAGAGAGGGAAAGAAATAGATTTTTTTAAATGTAATTTTATTAGATCAGTAGCTAAATCATCAAACCTCAAACTTACAAAGGTCCTTAAAGAGCTGTGAACCTGACAGAATGAAACCTGTCTTCTGATCACTGATTTCTGCCTCAGAGCAACCTTGATATGATACCCCTTCCTCTTCAGCTTCCAGATGCTGGCCCGGGCCCCGGCACACCCTAGTGAGGATTTTGAGGTGCATCTCAGGACAAGAGGAGTGAGCAGATCCTCCTGTCAATAAAGAAAGGGAAACATTTGGAGCACGGAGCTAGCAGGCTTAGGCCCTTTGAGTGAGTCTTTTTATGTCAGGAAGGTGTTGACTCCTTTAGCATCTCATCCCTGTCCTCAGATAGCAGGAAGAGAGGGTTGGTCCTCAGTTCAGGGGAGCAGTCGTCTCTTTCCTTCTAGAAAGCATGTAGGCTCACCAGGTGAGTTTAGTTTGATTTGATATCAGGCCCTCAAGAGGTAGCCTAGGCTGGCCCCAAATTCTCTATTTTTCCGTCTCAGCCTCCTGAGTGCAGGGACTTTTTTCTTGCCTTCTGCGGGGAAAGCTGTGGGGAAGGAACAGTGAGTGGTTGGGGCTGAGGACTGAGAAGATATCTGCTTCCTCGCCACCCCAGATAAAGGTCCCCGAATTCCTGTGACTGCTCGATGTTTCTACGACTTGTTTTCTTTGGATAGAGATTTTCACCCTAACGGCTGTAAAGATACGGCTTAGTGGCAGAGAGCTCACACGCCACGCGTAAGGCTTTGGGTTCAGTCTTCAGCACTGGGAAAAAAGGAAAGAAAAAGGAAAGCTAACAAACGTTGGGAGTGGTGTGCTGTGAATGGATTAATATGCCCGAGTTTGTTTCAGCATGAGCAGAGCTTGCTGCTCTCCGGAAGCCCCATTTGTATTATTAAAACTTTTCCACTGATGGCCCTCATGGTGACAGCCCTGTTCTGTCTGTGCTCTTGCCTTGGACTGGAGGTTCAAAGTTCAGCATCCACTGTGGGTGACCTTGCTTGGGATGAGACAGATGGACAGGATCCACGTGGGAGCTCGGCGAGCGCCGCCGCCTTCTCCTCCTACATTAGGCTGCCTTCCTTCCTGACTCCACCACCTGCTTACGGCCCTAGACATCAAGGGGCCGGTGGGCCTCTTAGCCCCATCCCTTACTGTTGATCTGCTTCAGGATTCCAGAGAAGACTTTGCTGGGTCTCCTTGAGGGATGTGTGAAGGCTTCAGGACAGCATGGAGCAGTCAGTTTTCTCTCTAGGAATTAAACTCAGGCTGTATGCTGGGCACCAAATGCCAACCCTCTGAGCCACGTCGCTGGCCCGTCGCTCCTTTCTGGGAAGGAACACGTTTGTTGTCTTCCATTCCCCTCTCCTTCCTTGTTGGCTTTTCCATCTGGCCACTTGGCCCTCTCTTTCCTTGGACTCTGCATTCTCTCCAGCCTCTGCTTACTCTCCTGTGCCCCGCCCTCTGCCTCAACATCTGGAGAGCTAAGCTTCTCTTCGGGGATGCAGAGTCGGTGAAGGGGGAACTGCTCAGTTGGAGGGCTCTGGCTTGACTAGAAGCTTGAGTAAGTTATACTTATCTCTCTGTGAGTCGGGGAGGCTGTGTGGCTCCTGCAGCCATTGTCCTGTCTTTTACTTTCAAGACTGTGGAGATGACTTCAAGATCACTGTTTCATTAGGGGACAAGAGTTTGTGTCCCAGGGCCCAGATGGAGCGACGCTCAACACTGAAGAACTGGCAACTCCAGTTCTCCATGGGCGCGAGCGTGACTGCACGCACATACAGGCACACATAGGTGCGCTCAAGAGTGCTCACACGGGTTGGGGATTTAGCTCAGTGGTAGAGAGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCGATCCCCAGCTCCGAAAAAAAGAAAAAAGAAAAAAAAACGCGCACACACACACACACACACACACAACCAATAAATAAATAATTTCTTTGAATTGCCTTCAGGGAATTTTTTTCCCTTTTACAGAGGAAAAATTAAAAAAGGTTGCTTATTCTGGTTGAGTTAGTTCCTAGGGCGCCAAGGGAACGAATCCTGTCACTCCCCATCAAGAGTCAGGGGTGGCAGAGAACTTCCTGGGAGTGAGATGGGCATTCTGTTCTGGAGGAATGAGCTGGACTAACATGGTGACCAGCAGAGGATGCTCTGTTCTCTGATGCGTGTGGACGTTGTGATAACCACTTCTTCCTCTGCCTTATGGGGCTCTTTTGATGGAGATTAATTTAAAAGGCTTAAGTGGAAGATTCCATCTAATGGGCACTAATTAGCATTATGCGTTTGTACACATTGCATGACTGAGCCAAGAGGTCATCCCCCCCCCCCCCCCAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCGCTGAGCTAAATCCCCAACCCCCCAAGAGGTCATTTTGAGTGACAGTCCAGATGTCATTTCCTTTTCACAGGAGAGCAGATGGTGACGTAAGTTCTACCAGCTCATTTTTATATGCTATTTGCTGCTGTAACAAAAGTAACCTCAGAAAGGAGGCGTTTATTTTGGCTCACGGCTGAAAGCTATAGTCTGTCTCCGTAGGAAGCGAACTCAGCAGCAGGAGTCTGAGGTGCTGGTCATACTTGTGTCCACAGTTGGGAAGCAGAGAGATGGATAGATACAGGTGCTCAGCTCAATTAACTCCTTTTTAATTAATCCAGGACTCCAGCCTGTGGTGGAAGGCTGCCACTGATATTTGGGGAGATCTTCCCACTTCCACACAGACAGGCATGCTATAGAGGTTTGCCTTCTAGGCCATGTTAGGTCTGTCAAGTTGGCTATGGATAGAAACCATCCCCCTGAGTCTGTCTCCTGTAATCCTGCCTCCTCCTCACCCTCCCGCTTGTGTCCTTAG
Seq C2 exon
CTGTTTGACCACATCGCCGAATGCCTGGCCAACTTCATGGACAAGCTACAAATCAAAGAGAAGAAGCTCCCTCTGGGTTTCACCTTCTCGTTCCCCTGCCACCAGACAAAACTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006116:ENSRNOT00000008813:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]