RnoINT0072132 @ rn6
Intron Retention
Gene
ENSRNOG00000015212 | Hspa14
Description
heat shock protein family A, member 14 [Source:RGD Symbol;Acc:1303296]
Coordinates
chr17:78749739-78751073:+
Coord C1 exon
chr17:78749739-78749894
Coord A exon
chr17:78749895-78750970
Coord C2 exon
chr17:78750971-78751073
Length
1076 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
3' ss Seq
CCCTGTCCCTGTCGCTGCAGAGC
3' ss Score
9.65
Exon sequences
Seq C1 exon
GCTGTTCAAGCACGATGTGAGAGGAAGTGCCCGGGCCATGATGAAGCTGATGAACAGCGCTGAGGTGGCCAAGCACTCCCTGTCCACCCTGGGAAGTGCCAATTGCTTCGTGGACTCCTTGTATGAAGGTCAAGACTTCGACTGCAATGTGTCCAG
Seq A exon
GTGAAATTACACGAAGGCCCAGACACTGCGTGTGGGATTTTCCAGCTTTTCTTTCCTTCCTCGGTTATCTGCAGCGAGGGGACCTCACTATCCAGATCATAACAGACTAAGTAGTTGTTACAGTTCGATCACATTACAGAGTCTTCCCAGGAGCCTTTGTGGCTGGTGACTAGCTCTTTAGTGTAGCCCAAAGGACAGAAAATGTGCTAATGTGCATTGAAGGCTCTTCAGAGGCTGAGAATCCTCACGTTGTTTCTGTGTCTACAATGCCGACTGCCGAGTCTTTCAAATACTCAATTTGTGTTTGCTTATTCATATCTGTGCAAAAAGGAGTTTATCTCAAACATTTTCAACTATAAAGTATATTTAGTATTTGTAGGTAAGAGAATTTAAAATCGCTCTCACCTGCATTTAAGAAATTGAGTGAGGCTCAGCGGGTAGAGGTGCTTGTCTGTCAGTGTATAAGCGCCGTGCAGACACATTCGAATGCGTAAAGGTAACAGATCAGATACAGGAGGACAGAAGGAGCAGCCAGCAGTGTTGGCAGTTGTACAACTTGCTGTGGGTGGGATGGATGGCGATATCTGAGTTTTTCTTGCTGTTCATGAATAAAATGTGGTAACTTTTAAAACACTGAGTATGAGATGAGGCTGTCCAGCTTTCATGGATAGATGGATCTCAGTCCTCCGTGTCAGCACGCAGCTTTCTTGTACAGACTCCCATGTTGCTGTGACGTGCTCTCAGGCTGTAGGTGTGACTGGGAATGCCTGTGAAAGTGTGGACATAGAAAGAGCGAAATGGCCTAGTCAGCGGGTCTGGTGTTCGCAGAGCCTTACTGCTGGGCATGCCGTGGATTTGCCTGTCTTCTTAGCTGGTTTTGGGTGCTTTTGGTCAGCATGAGCGACGGCCTTCCCTTTGAATTGGATGTAACAGCCGTGTAGATGAATAACTCCGGGACACACACACATAGAGAGTGTCTGCTGATGTGCCGTCAGTTCTTGAGATCAGTCACTCTTCCGAGAACTGCACTAAGTGTACTCTGCCCTCTCCTCTGTCCCCTGTCCCTGTCGCTGCAG
Seq C2 exon
AGCAAGATTTGAGCTTCTTTGTTCTCCGCTTTTTAACAAATGTATAGAAGCAGTCCGGGCGCTCCTACAGCAGAGTGGATTTACAGCAGATGACATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015212:ENSRNOT00000020854:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(10.3=100)
A:
NA
C2:
PF0001215=HSP70=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCAAGCACGATGTGAGAGG
R:
TGTTAATGTCATCTGCTGTAAATCCA
Band lengths:
255-1331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]