RnoINT0073482 @ rn6
Intron Retention
Gene
ENSRNOG00000025990 | Igll1
Description
immunoglobulin lambda-like polypeptide 1 [Source:RGD Symbol;Acc:2321140]
Coordinates
chr11:88388378-88389752:+
Coord C1 exon
chr11:88388378-88388571
Coord A exon
chr11:88388572-88389636
Coord C2 exon
chr11:88389637-88389752
Length
1065 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTGCCTACCTCACCCAACAGGTT
3' ss Score
8.57
Exon sequences
Seq C1 exon
ATGAAGCTCAGGGCAGGACAGACACTGGGCACTATCCCCAGGCAATGTGAAATTCTCCTTCTGTTGCTGCTGTTGGGCCTGGTGGATGGTGTCCACCATATACTTTCCCCAAGCTCAGCACAAAGGGGCAGAGCTGTGGGCCCTGGAGCCTCAGTGGGAAGCAGCAGGTCTAGCCTGTGGACCCTTCCAGGCAG
Seq A exon
GTAAGAGACTTTCTTATAGGGGAATGTATGTGTGTGGGTCCATGGACTGGAGGCTGAAATGGGTGACTGGGAAGGAAGGTAACCATTGAGGCCATAGGTGTGAGAAGGAAGGATCTGCCTAAGAGGAGGGGGCTGGGCAAATGCTAGCTTAAACTTAGTACCTAACTCATGCAAGGCCAGTATTCTATCAATGAGCCATATCCATAGCCCACCTCCCTTTTCCATTTATTTAGAGAAGAGGGCTTGCCTGATTGCCTAGGCTGATCTTACTTTCTGTAGCCTATGCAAGATTTGACCTCCTAGATCCTTCCTCCTTCCTAAGTCCTCTTTAGTAGCTGGAATTAAGGCTGGTACCAGGTTATTTTAGTGTGTCATGGTCCTAGTTCATTCAGAATTGTGTGTGCTCATCTTAGTCAAATAGTTGCAGTTTTAGAAGTTTATTCTTAGGCAATTATCAAAACATCCATTAAATATTCTAAGAGTGTCTTGGGCTGGGAAGAGTAGACACTGGGGACATGGAGACCACCCAGTGAAGAAGACTTTGACTGTCAAGCATGAGGACCTAGTTCAGACTCTCAGCACTCATGCATCTGCTATCAAGATACAATCACATGTTTTTTTACTCAGATAAATAGAAAAAAATTAAGGTTTGGTGTGGTGGCACATCCCTTATATCCCAGCAGTTGGCAGGCAGAGGCAGATAGACCTTTGTGAGTTTGAGGCCAGTCTGGTTTACATAGTGGCCTCATGACAGAAATAAAACAAAAGAATTCTCACAAAATATAGTGTGCATGGGTCCTGGGATGAAGCACAGGACCAGGAGGAATACACACACACACACACACACACACACACACACACACACACACACACACAAATACACATCAGAGATTCCTGGTTCCACCACACTCACCAGAGAAGATATACCACCCAGAACTTTTCTGAGAATCAGTTGGGCCTGGTGTTGCCATCAACTGGATGGAAATAGGAGATGGATAGATGGACTTATTTTCTGCCAAGGACACAGTTCATTTCCTGAAGTCCGGTGCCTACCTCACCCAACAG
Seq C2 exon
GTTCCTGTTCCAGATCATCCCACGGGGAGCAGGTCCCAGGTGCTGGCCCCATAGGCTTCCATCCAAGTCCCAGTTATGGTACGTCTTTGGTAGTGGGACCCAGCTCACAATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025990:ENSRNOT00000029851:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGCTCAGGGCAGGACAG
R:
CTAGGATTGTGAGCTGGGTCC
Band lengths:
310-1375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]